PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0065481
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 663aa    MW: 74543.5 Da    PI: 6.3367
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0065481genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS376.82.7e-1152886581373
                    GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                             l+ lL++cAeavs +d e a +lL+++ +++sp gd +qRla++f++AL+arla++++++y al++++ s    +++l++++++  v
  RcHm_v2.0_Chr5g0065481 288 LRALLISCAEAVSVDDRETAGELLKQIMQHSSPFGDCTQRLAHCFANALEARLAGTGTQIYTALTTKRMS---AADSLKFYQAYIAV 371
                             5789*********************************************************999999998...99************ PP

                    GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeel 172
                             +P++k+  + aN +Il+a+e++e++HiiDf+i +G+QWpaL++ L+ Rp+gpp+lRiTg++ p+sg   +e ++etg+rLak+++++
  RcHm_v2.0_Chr5g0065481 372 CPFMKLLMIFANDMILKAAEKAETLHIIDFGIRYGFQWPALIHCLSRRPGGPPKLRITGLEFPSSGfrPEEGVQETGHRLAKYCRRF 458
                             *****************************************************************9********************* PP

                    GRAS 173 gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfle 259
                             +v+fe++  +ak++e+l++++L+v+++E+laVn+  + ++llde+v ++s+rd+vL+l+++l+P+v+v +  + +h ++ F+ rf e
  RcHm_v2.0_Chr5g0065481 459 NVHFEYHG-IAKKWETLQVDDLKVQRNEVLAVNCLNRFKNLLDETVVVNSPRDTVLNLIRNLNPDVFVQSVVNGSHHAPFFVPRFRE 544
                             ********.7***************************************************************************** PP

                    GRAS 260 aleyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvks 346
                             al ++salfd+l+++lpre++ r   E+e++gre+vn+vaceg++r+ r et+++W+ r ++aGF+++pl+ ++++++k  +++ + 
  RcHm_v2.0_Chr5g0065481 545 ALFHFSALFDMLDTNLPREDQMRLGFEKEFIGREVVNIVACEGFHRIVRPETYKQWQIRNMRAGFRQLPLDREVMNKIKDKVKMGYH 631
                             **************************************************************************************9 PP

                    GRAS 347 dgyrveeesgslvlgWkdrpLvsvSaW 373
                               + v+e+  +l+  Wk+r +++  +W
  RcHm_v2.0_Chr5g0065481 632 PSFVVDEDGRWLLHEWKGRIMYASACW 658
                             99************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 663 aa     Download sequence    
MDPRFSEFPN FNDHTLLPDM LNEYPSSDPS QDLSFVDPNP INSSSSFSPE GDDGEFSDSV  60
LKYINQVLIK EDIESKPSMF HDPLALQATV ESLHEVIGGG KCPTSQDLNP LCVDQDVYGN  120
GNGMVGSYRS ELMVPDVLSK NELLLQFNPG AEEGSKFLPR GQLISAEGNK PYAVADRKAG  180
DVVVTTQKNG SEHFRVGSRG KKNHQREDID LEDGRSNKQS AVYMDGEEGE LSDIFDKVLL  240
SKPIKSKDDQ VSQNGANNSL QQDGLSVGIG NGKVCGKNQG NKKEVIDLRA LLISCAEAVS  300
VDDRETAGEL LKQIMQHSSP FGDCTQRLAH CFANALEARL AGTGTQIYTA LTTKRMSAAD  360
SLKFYQAYIA VCPFMKLLMI FANDMILKAA EKAETLHIID FGIRYGFQWP ALIHCLSRRP  420
GGPPKLRITG LEFPSSGFRP EEGVQETGHR LAKYCRRFNV HFEYHGIAKK WETLQVDDLK  480
VQRNEVLAVN CLNRFKNLLD ETVVVNSPRD TVLNLIRNLN PDVFVQSVVN GSHHAPFFVP  540
RFREALFHFS ALFDMLDTNL PREDQMRLGF EKEFIGREVV NIVACEGFHR IVRPETYKQW  600
QIRNMRAGFR QLPLDREVMN KIKDKVKMGY HPSFVVDEDG RWLLHEWKGR IMYASACWAP  660
SRT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0GRAS family protein