PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0065461
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 665aa    MW: 75019.3 Da    PI: 5.886
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0065461genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS373.92e-1142906601373
                    GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                             l+ lL++cAeavs +d e a++lL+++ +++sp gd +qRla++f++AL+arla++++++y al++++ s    +++l++++++  v
  RcHm_v2.0_Chr5g0065461 290 LRALLISCAEAVSVDDRETASELLKQIMQHSSPFGDYTQRLAHCFANALEARLAGTGTQTYTALSTKRMS---AADTLKFYQAYIAV 373
                             5789**********************************************************99999998...9************* PP

                    GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeel 172
                             +P++k+  + aN++Il+a+e++e++HiiDf+i +G+QWpaL++ L+ Rp+gpp+lRiTgv+ p sg   +e+++etg+rL+k+++++
  RcHm_v2.0_Chr5g0065461 374 CPFMKMLMVFANHMILKAAEKAETLHIIDFGILYGFQWPALIHCLSRRPGGPPKLRITGVELPLSGfrPEERVQETGHRLSKYCKRF 460
                             ***************************************************************9999******************** PP

                    GRAS 173 gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfle 259
                             +vpfe+ + +ak++e+l++++L+v+++E+laVn+  + ++llde+v ++s+rd vL+l+++l+P+v+v +  + +h+ + F+ rf e
  RcHm_v2.0_Chr5g0065461 461 NVPFEYCA-IAKKWETLQFDDLKVQRNEVLAVNCLCRFKYLLDETVVVNSPRDIVLNLIRKLNPDVFVQSVVNGSHQFPFFVPRFRE 546
                             ********.7***************************************************************************** PP

                    GRAS 260 aleyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvks 346
                             al ++salfd+l+++lp++++ r   E+e++gre+vn+vaceg++r+ r et+++W+ r ++aGF+++pl++++++++k  +++ + 
  RcHm_v2.0_Chr5g0065461 547 ALFHFSALFDMLDNNLPPDDQMRLGFEKEFIGREVVNIVACEGSQRIVRPETYKQWQIRNMRAGFRQLPLDHEVMNKIKDTVKMGYH 633
                             **************************************************************************************9 PP

                    GRAS 347 dgyrveeesgslvlgWkdrpLvsvSaW 373
                               + v+e+ +++++gWk+r +++  +W
  RcHm_v2.0_Chr5g0065461 634 PYFVVDEDGHWMLQGWKGRIMFASACW 660
                             99************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 665 aa     Download sequence    
MDPRFSEFPN FNDQTLLPDM LNEYPSSHPF EDLSFLDPNP SNYALSSSFA PEGDDGEFSG  60
SVLKYINQVL MEEDMELKPC MFHDPLALQA TEESLYEAIG GKYPTSQDQN PICTDQNVHG  120
NGNGNGNGMV GCELMVPDVI CKNELLVQFN RGAEEGSKFL PRGQLVSAEG NKPYAVADRK  180
AGDAVVMTQK NGSEHFCVSS RGKKNHRREE IDLEDGRCNK QSAVYMDDEE GELSDIFDKV  240
LLSKPIKSKD DQVSQNGANN GLQQDGQSVG IGNGKVCGKN QGNKKEVIDL RALLISCAEA  300
VSVDDRETAS ELLKQIMQHS SPFGDYTQRL AHCFANALEA RLAGTGTQTY TALSTKRMSA  360
ADTLKFYQAY IAVCPFMKML MVFANHMILK AAEKAETLHI IDFGILYGFQ WPALIHCLSR  420
RPGGPPKLRI TGVELPLSGF RPEERVQETG HRLSKYCKRF NVPFEYCAIA KKWETLQFDD  480
LKVQRNEVLA VNCLCRFKYL LDETVVVNSP RDIVLNLIRK LNPDVFVQSV VNGSHQFPFF  540
VPRFREALFH FSALFDMLDN NLPPDDQMRL GFEKEFIGRE VVNIVACEGS QRIVRPETYK  600
QWQIRNMRAG FRQLPLDHEV MNKIKDTVKM GYHPYFVVDE DGHWMLQGWK GRIMFASACW  660
APSRT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0GRAS family protein