PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0062511
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 282aa    MW: 31897.2 Da    PI: 9.8769
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0062511genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.31.2e-12591421199
                             HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS
                      B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96 
                             l+ g+l +    a++++     +  ++l+d++g  W ++l  +++ g+++l+kGW eF++   Lk+g f+ F+++g  s+f   v++
  RcHm_v2.0_Chr5g0062511  59 LEDGMLEIEGYVARNYEDF--LGCSVVLTDPKGSMWPMEL--KRSNGSVWLKKGWLEFANFYSLKQGCFIFFTHKGFdSGF--QVRI 139
                             4555666666666666544..3446***************..*******************************99765777..9999 PP

                             E-S CS
                      B3  97 frk 99 
                             f+k
  RcHm_v2.0_Chr5g0062511 140 FNK 142
                             986 PP
2B346.85.3e-15186281699
                             ..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS. CS
                      B3   6 tpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr. 87 
                             +++++l +g l l  +f++e+     +  +++++l+ ++g++W+ k+++  + +++   + +GW +F+ +n+L++gD + ++l+++ 
  RcHm_v2.0_Chr5g0062511 186 MQPSYLLRG-LKLNATFVNENicA--TGATRKIKLQIPNGKTWSAKCSVylCMNKDYAKICSGWTKFAAENKLQVGDACALELIKEc 269
                             556666666.9999*******662..445668***************87787777778899************************** PP

                             SEE..EEEEE-S CS
                      B3  88 sefelvvkvfrk 99 
                              + +++v++fr+
  RcHm_v2.0_Chr5g0062511 270 PKLTFLVHIFRA 281
                             **********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    
MKVALSLTLS RNCCFSSQTK SPIVFIVVGL VMASSSRRKS SAKGVASPSF FKVVVDEALE  60
DGMLEIEGYV ARNYEDFLGC SVVLTDPKGS MWPMELKRSN GSVWLKKGWL EFANFYSLKQ  120
GCFIFFTHKG FDSGFQVRIF NKRWLEIDYP FKSSHQEDCK FRRGGDEAFT RAKRFKSNHP  180
CLAVRMQPSY LLRGLKLNAT FVNENICATG ATRKIKLQIP NGKTWSAKCS VYLCMNKDYA  240
KICSGWTKFA AENKLQVGDA CALELIKECP KLTFLVHIFR AN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.18e-15B3 family protein