PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr5g0060011 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | ARF | ||||||||
Protein Properties | Length: 802aa MW: 88767.1 Da PI: 6.8779 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73 | 3.7e-23 | 168 | 269 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ F ++++L +gD v+ RcHm_v2.0_Chr5g0060011 168 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELVAKDLHGVEWRFRHIYRGQPRRHLLTTGWSIFISQKNLVSGDAVL 253 99****************************963.3445679********************************************** PP EEE-SSSEE..EEEEE-S CS B3 82 Fkldgrsefelvvkvfrk 99 F + +++el+++++r+ RcHm_v2.0_Chr5g0060011 254 FL--RGENGELRLGIRRA 269 **..4499999****996 PP | |||||||
2 | Auxin_resp | 121 | 9.3e-40 | 294 | 375 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +a+a+stks+F+v+Y+Pras++eFv++++k+++++ ++v++G+Rfkm+f+ +ds+err+sG+v+g+sdldp+rWp+SkWr+L RcHm_v2.0_Chr5g0060011 294 VANAVSTKSMFHVFYSPRASHAEFVIPYQKYVRSIATPVTMGTRFKMRFDRDDSPERRCSGVVTGISDLDPYRWPKSKWRCL 375 689******************************************************************************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 802 aa Download sequence |
MEFDLNHAVV GDVVEKNAYC NGDCDKGGCA HCLSSSTSSC SSNSSSVPVI SSIYLELWHA 60 CAGPLISLPK KGNVVVYFPQ GHLEQVASSS PPFSSMERPH FDLQPQIFCK VVNVQLLANK 120 ENDEVYTHVT LLPQAESAGM NLEGKELEEL GVDEGDGGSP TKSTPHMFCK TLTASDTSTH 180 GGFSVPRRAA EDCFPPLDYK QQRPSQELVA KDLHGVEWRF RHIYRGQPRR HLLTTGWSIF 240 ISQKNLVSGD AVLFLRGENG ELRLGIRRAV RPRNGLPDSV IGNQNSYSSV LSPVANAVST 300 KSMFHVFYSP RASHAEFVIP YQKYVRSIAT PVTMGTRFKM RFDRDDSPER RCSGVVTGIS 360 DLDPYRWPKS KWRCLMVRWD DDIGNDHQER VSLWEIDPSV SLPPLSIQSS PRLKKLRTSL 420 QAFPPNHSIP AGSCGLMDFE ETVKSSKVLQ GQENMGFISP HYGCDTLKSP VDFEMQPSAH 480 QNLASHVSQK ATIGEFMRAH HTSYTGFAES DRFPKVLQGQ EICPLRSLTG KANFNLGNWE 540 SNLGSTSFNS YQAPKPNMFT LGSESLLNMY FPYGDIHKVG QDPMICSNTT NFPRESIKAN 600 PYSIQMGVTR NEVGRPKKPS EHQPQESTSA LPTLVTNIKS PKEVSADGTA NGCKLFGFSL 660 SGETPTLSQS SSKRSCTKVH KQGSLVGRAI DLSKLNGYGD LLSELERLFS MECLLRDPNK 720 GWRILYTDSE NDVMVVGDDP WHEFCNVVSK IHIYTQEEVE KMTIGMISDD TQSCLEQAPP 780 MLEVSKSSSV GQPDSSPTAI RV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60450.1 | 0.0 | ARF family protein |