PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0060011
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ARF
Protein Properties Length: 802aa    MW: 88767.1 Da    PI: 6.8779
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0060011genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3733.7e-23168269199
                             EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                             f+k+lt sd++++g +++p++ ae++      + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ F ++++L +gD v+
  RcHm_v2.0_Chr5g0060011 168 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELVAKDLHGVEWRFRHIYRGQPRRHLLTTGWSIFISQKNLVSGDAVL 253
                             99****************************963.3445679********************************************** PP

                             EEE-SSSEE..EEEEE-S CS
                      B3  82 Fkldgrsefelvvkvfrk 99 
                             F   + +++el+++++r+
  RcHm_v2.0_Chr5g0060011 254 FL--RGENGELRLGIRRA 269
                             **..4499999****996 PP

2Auxin_resp1219.3e-40294375182
              Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                             +a+a+stks+F+v+Y+Pras++eFv++++k+++++ ++v++G+Rfkm+f+ +ds+err+sG+v+g+sdldp+rWp+SkWr+L
  RcHm_v2.0_Chr5g0060011 294 VANAVSTKSMFHVFYSPRASHAEFVIPYQKYVRSIATPVTMGTRFKMRFDRDDSPERRCSGVVTGISDLDPYRWPKSKWRCL 375
                             689******************************************************************************9 PP

Sequence ? help Back to Top
Protein Sequence    Length: 802 aa     Download sequence    
MEFDLNHAVV GDVVEKNAYC NGDCDKGGCA HCLSSSTSSC SSNSSSVPVI SSIYLELWHA  60
CAGPLISLPK KGNVVVYFPQ GHLEQVASSS PPFSSMERPH FDLQPQIFCK VVNVQLLANK  120
ENDEVYTHVT LLPQAESAGM NLEGKELEEL GVDEGDGGSP TKSTPHMFCK TLTASDTSTH  180
GGFSVPRRAA EDCFPPLDYK QQRPSQELVA KDLHGVEWRF RHIYRGQPRR HLLTTGWSIF  240
ISQKNLVSGD AVLFLRGENG ELRLGIRRAV RPRNGLPDSV IGNQNSYSSV LSPVANAVST  300
KSMFHVFYSP RASHAEFVIP YQKYVRSIAT PVTMGTRFKM RFDRDDSPER RCSGVVTGIS  360
DLDPYRWPKS KWRCLMVRWD DDIGNDHQER VSLWEIDPSV SLPPLSIQSS PRLKKLRTSL  420
QAFPPNHSIP AGSCGLMDFE ETVKSSKVLQ GQENMGFISP HYGCDTLKSP VDFEMQPSAH  480
QNLASHVSQK ATIGEFMRAH HTSYTGFAES DRFPKVLQGQ EICPLRSLTG KANFNLGNWE  540
SNLGSTSFNS YQAPKPNMFT LGSESLLNMY FPYGDIHKVG QDPMICSNTT NFPRESIKAN  600
PYSIQMGVTR NEVGRPKKPS EHQPQESTSA LPTLVTNIKS PKEVSADGTA NGCKLFGFSL  660
SGETPTLSQS SSKRSCTKVH KQGSLVGRAI DLSKLNGYGD LLSELERLFS MECLLRDPNK  720
GWRILYTDSE NDVMVVGDDP WHEFCNVVSK IHIYTQEEVE KMTIGMISDD TQSCLEQAPP  780
MLEVSKSSSV GQPDSSPTAI RV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60450.10.0ARF family protein