PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | RcHm_v2.0_Chr5g0059781 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 180aa MW: 20618.7 Da PI: 9.9686 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 163.2 | 9.7e-51 | 15 | 143 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 lppGfrFhP+deel+v+yL++kv++++l++ + i+e+d+yk++Pw+Lpk++ +e+ewyfFs+r++ky++g+r+nra++sgyWka g RcHm_v2.0_Chr5g0059781 15 LPPGFRFHPSDEELIVHYLQRKVTSRPLPA-HLITEIDLYKYNPWELPKMALFGEDEWYFFSPRERKYPNGERPNRAAASGYWKAAG 100 79****************************.88***************77777999******************************* PP NAM 88 kdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 +dk++l++ ++ +g+kk Lvfy+grap+g kt+W+m eyrl RcHm_v2.0_Chr5g0059781 101 SDKPILTScgISKRIGVKKALVFYTGRAPTGIKTEWIMVEYRL 143 *******9766677***************************97 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 180 aa Download sequence |
MEIEPTFSAS PNFQLPPGFR FHPSDEELIV HYLQRKVTSR PLPAHLITEI DLYKYNPWEL 60 PKMALFGEDE WYFFSPRERK YPNGERPNRA AASGYWKAAG SDKPILTSCG ISKRIGVKKA 120 LVFYTGRAPT GIKTEWIMVE YRLLDSTTKP SRSKGSMRVS EIFNALLRLH ICVSQKHGAN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G77450.1 | 2e-68 | NAC family protein |