PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr5g0058761

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

ARF

Protein Properties

Length: 711aa MW: 78532.6 Da PI: 7.8899

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr5g0058761	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	72.8	4.2e-23	112	213	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 f k+lt+sd+++ g +++p+ +ae++ ++ + t++ +d +g+ W++++iyr++++r++lt+GW+ Fv++++L +gD++ RcHm_v2.0_Chr5g0058761 112 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TVIAKDVHGELWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSI 196 89**************************996555555..8***************************************** PP EEEE-SSSEE..EEEEE-S CS B3 81 vFkldgrsefelvvkvfrk 99 vF + +++ l+v+++r+ RcHm_v2.0_Chr5g0058761 197 VFL--RAENGDLCVGIRRA 213 ..4488999***997 PP
2	Auxin_resp	113.7	1.7e-37	286	369	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a+++++FevvY+Prast+eF+vk++ v++a++v+++ GmRfkm fetedss++++ +Gt+++v d +rWpnS+Wr+L+ RcHm_v2.0_Chr5g0058761 286 AATLAANGQPFEVVYYPRASTPEFCVKASAVRAAMRVQWCSGMRFKMPFETEDSSRISWfMGTIASVDVNDKIRWPNSPWRVLQ 369 68899*****************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 711 aa Download sequence
MKDMEKSLDP QLWHACAGGM VQMPPVNSKV FYFPQGHAEH AQTHVDFPAS SVRIPPLILC 60 RVAGIRYMAD PETDEVFARI RLVPSESNEV FAQDQGSVDS DGSGNPEKPS SFAKTLTQSD 120 ANNGGGFSVP RYCAETIFPR LDYSADPPVQ TVIAKDVHGE LWKFRHIYRG TPRRHLLTTG 180 WSTFVNQKKL VAGDSIVFLR AENGDLCVGI RRAKRGSPEG SSESGWNHGG SGGGSVLPYS 240 GFSVFLKDEE SKMGRNNGFG NSSLNNGKER GGRGGGRVRP EAVVEAATLA ANGQPFEVVY 300 YPRASTPEFC VKASAVRAAM RVQWCSGMRF KMPFETEDSS RISWFMGTIA SVDVNDKIRW 360 PNSPWRVLQV TWDEPDLLQN VKCVSPWLIE LVSNFPIIHM APFSPPRKKL RIPQHPDFDG 420 QLTLPSFSGN PLGSSSPMCC LPDNTPAGIQ GARHAQLRIS LSNLHFNSKL QSGLFSSSFQ 480 RFDQNSRIPN DIRNGHTNSN ESLSCLLTMG SSNQNLEKSD DVKKHQFLLF GQPIITEQQI 540 SRSCSSDAVS QVLAGNNLKD ENQGRKRFLS VGSDSALERW ASLEKSALNE EFQAIDVDTG 600 HCKVFMESED VGRTLDLSAL GSYDELYRRL TIMFGLEKPE MLSHVLYRDP TGVVKQTGDE 660 PFGEFKKTAK RLTILTRPAN ETIGRTWIRG MENAESRLGA SNKTGPLSIF A

Sequence ? help Back to Top

Protein Sequence Length: 711 aa Download sequence

MKDMEKSLDP QLWHACAGGM VQMPPVNSKV FYFPQGHAEH AQTHVDFPAS SVRIPPLILC  60
RVAGIRYMAD PETDEVFARI RLVPSESNEV FAQDQGSVDS DGSGNPEKPS SFAKTLTQSD  120
ANNGGGFSVP RYCAETIFPR LDYSADPPVQ TVIAKDVHGE LWKFRHIYRG TPRRHLLTTG  180
WSTFVNQKKL VAGDSIVFLR AENGDLCVGI RRAKRGSPEG SSESGWNHGG SGGGSVLPYS  240
GFSVFLKDEE SKMGRNNGFG NSSLNNGKER GGRGGGRVRP EAVVEAATLA ANGQPFEVVY  300
YPRASTPEFC VKASAVRAAM RVQWCSGMRF KMPFETEDSS RISWFMGTIA SVDVNDKIRW  360
PNSPWRVLQV TWDEPDLLQN VKCVSPWLIE LVSNFPIIHM APFSPPRKKL RIPQHPDFDG  420
QLTLPSFSGN PLGSSSPMCC LPDNTPAGIQ GARHAQLRIS LSNLHFNSKL QSGLFSSSFQ  480
RFDQNSRIPN DIRNGHTNSN ESLSCLLTMG SSNQNLEKSD DVKKHQFLLF GQPIITEQQI  540
SRSCSSDAVS QVLAGNNLKD ENQGRKRFLS VGSDSALERW ASLEKSALNE EFQAIDVDTG  600
HCKVFMESED VGRTLDLSAL GSYDELYRRL TIMFGLEKPE MLSHVLYRDP TGVVKQTGDE  660
PFGEFKKTAK RLTILTRPAN ETIGRTWIRG MENAESRLGA SNKTGPLSIF A

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30080.1	0.0	ARF family protein