PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr5g0056681

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 314aa MW: 34393.2 Da PI: 7.5462

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr5g0056681	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.8	0.00072	113	135	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H RcHm_v2.0_Chr5g0056681 113 YECKTCNRTFPSFQALGGHRASH 135 99**********99999998887 PP
2	zf-C2H2	13.2	0.00027	202	224	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H RcHm_v2.0_Chr5g0056681 202 HECSICGSEFTSGQALGGHMRRH 224 78********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence
MEGQEELVLS DHQQTQMIIK GKRTKRQRPM SPFGLAVTSS SSSACGGAHG GEEYGNSFTS 60 ASYDSTEEEE DMANCLILLA QGCHVIPKQE TSSTLHEATA VSSHVGKAGF YVYECKTCNR 120 TFPSFQALGG HRASHKKPKS STAAMADQEK KPASTHFTSA SMDQEVEDSK QFIKKSSPPP 180 THPTVPIQIK GFQSNNNKAK IHECSICGSE FTSGQALGGH MRRHRAAVAN NNTTTSTTQV 240 VGIGAAIDNS MRSKQERTIL ALDLNLPAPE DHDHHHHHHQ QHQIHHQRDS KFQFVPTQQT 300 SLVFNAPALV DCHY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	4e-59	C2H2 family protein