PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr5g0053481 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | NF-YB | ||||||||
Protein Properties | Length: 188aa MW: 20328.8 Da PI: 5.3203 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 166.7 | 3e-52 | 2 | 97 | 1 | 96 |
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkk 89 vreqd+++Pianv+rim+++lP +akis+daketvqecvse+isf+t+ea+++cqre+rkt++++d+lwa+++lGf++y+epl+++l+k RcHm_v2.0_Chr5g0053481 2 VREQDQYMPIANVIRIMRRILPPHAKISDDAKETVQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMSKLGFDNYIEPLSLFLSK 90 69*************************************************************************************** PP NF-YB 90 yrelege 96 yre+eg RcHm_v2.0_Chr5g0053481 91 YREAEGT 97 ****986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence |
MVREQDQYMP IANVIRIMRR ILPPHAKISD DAKETVQECV SEYISFITGE ANERCQREQR 60 KTVTAEDVLW AMSKLGFDNY IEPLSLFLSK YREAEGTERS SSLFAKCERG DGGMVEYAPV 120 LGHYGPPGFG LAAQQPGMYK AGAMSGYYIG GAGGSGNEGG GAGSSSASQQ RQGQSAMGGG 180 FDPFAQFK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47670.2 | 1e-62 | NF-YB family protein |