PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr5g0051441

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

Trihelix

Protein Properties

Length: 456aa MW: 51404.6 Da PI: 6.2517

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr5g0051441	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	67.1	3.5e-21	126	223	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tse 74 +Wt++ v++Li ++ ++++ + +kk++W+ vsk m +g+++sp+qC++k+++lnkryk+++++ +++ +++ RcHm_v2.0_Chr5g0051441 126 KWTDRVVRLLISVVACVDDDGTVEGggeglkrksavlQKKGKWKTVSKIMIGKGCHVSPQQCEDKFNDLNKRYKRLNDILGRGtSCR 212 7************8877777532345666777888********************************************6699 PP trihelix 75 ssstcpyfdql 85 ++++ ++ d++ RcHm_v2.0_Chr5g0051441 213 VVENPALMDSM 223 99999888887 PP

Sequence ? help Back to Top
Protein Sequence Length: 456 aa Download sequence
MDGSGLGGGF LSGPSGGTLD LESGIPRHQE KQLGLPGLAH HQHHGIVMSG VGVGVDHRPV 60 GLAEVKGSIP RGASMNVVKG KAVAPFNTNN AYNLSEEDEP SYTEDGNGEN VEGAKGKKGS 120 TWQRMKWTDR VVRLLISVVA CVDDDGTVEG GGEGLKRKSA VLQKKGKWKT VSKIMIGKGC 180 HVSPQQCEDK FNDLNKRYKR LNDILGRGTS CRVVENPALM DSMPHLSAKA KDDVRKILSS 240 KQLFYKEMCA YHNGQWIPGC HDLDLKGHPL PPGRCSTDNN VSEEEGAEEH HDTEDDELDD 300 EDNNADGIDR DRMGRMGDRT RSSEEDDHFW QQVSLDSFEV EMAEVLQDPT KSLWERREWI 360 KKQKLQLQQQ RVSCEAEALE LEKQRYKWLR YRSKKDRELE RLRLENERMR LENDKRVLQL 420 RQKEVEIDLR LSEASLEPSV GIDRLLGRDL DLGRHQ

Sequence ? help Back to Top

Protein Sequence Length: 456 aa Download sequence

MDGSGLGGGF LSGPSGGTLD LESGIPRHQE KQLGLPGLAH HQHHGIVMSG VGVGVDHRPV  60
GLAEVKGSIP RGASMNVVKG KAVAPFNTNN AYNLSEEDEP SYTEDGNGEN VEGAKGKKGS  120
TWQRMKWTDR VVRLLISVVA CVDDDGTVEG GGEGLKRKSA VLQKKGKWKT VSKIMIGKGC  180
HVSPQQCEDK FNDLNKRYKR LNDILGRGTS CRVVENPALM DSMPHLSAKA KDDVRKILSS  240
KQLFYKEMCA YHNGQWIPGC HDLDLKGHPL PPGRCSTDNN VSEEEGAEEH HDTEDDELDD  300
EDNNADGIDR DRMGRMGDRT RSSEEDDHFW QQVSLDSFEV EMAEVLQDPT KSLWERREWI  360
KKQKLQLQQQ RVSCEAEALE LEKQRYKWLR YRSKKDRELE RLRLENERMR LENDKRVLQL  420
RQKEVEIDLR LSEASLEPSV GIDRLLGRDL DLGRHQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	2e-66	Trihelix family protein