PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0050921
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 450aa    MW: 50811.3 Da    PI: 6.109
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0050921genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS461.16.5e-141254471374
                    GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                             l++lLl+cA+ v++g+le+a+ +L+++s las+dgd+mqR+aayfteALa r+++ +++lykal +++ s  ++see+ ++k+f+e+
  RcHm_v2.0_Chr5g0050921  25 LIHLLLTCANYVAAGNLENANIALEQISLLASSDGDTMQRIAAYFTEALADRILKAWPGLYKALYSTRIS--SVSEEFLVRKVFFEM 109
                             689*************************************************************887776..59************* PP

                    GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgv 174
                              P+lk++++++NqaI ea+e+e++vHiiD++ s+++QW+aLl+ L++Rpegpp+lRiTgv++    +ke l ++++ L++ Ae+l+ 
  RcHm_v2.0_Chr5g0050921 110 LPFLKVAYVLTNQAIIEAMEEEKMVHIIDLNSSEPAQWIALLHVLSARPEGPPHLRITGVHQ----RKEVLDQMAHSLTEEAERLDT 192
                             **************************************************************....9******************** PP

                    GRAS 175 pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll............................................... 214
                             pf+fn+ v+++le+l++e+L+vk+gEala+++vlq h+ll                                               
  RcHm_v2.0_Chr5g0050921 193 PFQFNP-VVSKLETLDFEKLHVKTGEALAISSVLQFHSLLssdddfhrkkfslesknpnrvhspgvlqmgqgtlgellekdmgkgys 278
                             ******.799***************************************************************************** PP

                    GRAS 215 ..........desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellg 291
                                        ++v +  + d++L+++++l Pk++vv+eq+++hn+++++er++eal+ y+alfd+le++++r+s er+kvE++l+g
  RcHm_v2.0_Chr5g0050921 279 pspdstssspLSPVGSV-KMDSFLNAFWGLTPKIMVVTEQDSNHNGSTLMERLFEALYSYAALFDCLESTMSRTSLERMKVEKMLFG 364
                             ***99876553333333.4899***************************************************************** PP

                    GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                             +ei+n++aceg+er+erhe+lekW +rl+ aGF++vpls++ + qa+ ll+ ++ dgyr+ ee+g++++ W+drpL+svSaWr
  RcHm_v2.0_Chr5g0050921 365 EEIKNIIACEGSERKERHEKLEKWIQRLDLAGFGNVPLSYYGMLQARKLLQGYGCDGYRIREENGCVLMSWQDRPLFSVSAWR 447
                             **********************************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    
MTSPSLGSPY PWQRELKSEE RGLCLIHLLL TCANYVAAGN LENANIALEQ ISLLASSDGD  60
TMQRIAAYFT EALADRILKA WPGLYKALYS TRISSVSEEF LVRKVFFEML PFLKVAYVLT  120
NQAIIEAMEE EKMVHIIDLN SSEPAQWIAL LHVLSARPEG PPHLRITGVH QRKEVLDQMA  180
HSLTEEAERL DTPFQFNPVV SKLETLDFEK LHVKTGEALA ISSVLQFHSL LSSDDDFHRK  240
KFSLESKNPN RVHSPGVLQM GQGTLGELLE KDMGKGYSPS PDSTSSSPLS PVGSVKMDSF  300
LNAFWGLTPK IMVVTEQDSN HNGSTLMERL FEALYSYAAL FDCLESTMSR TSLERMKVEK  360
MLFGEEIKNI IACEGSERKE RHEKLEKWIQ RLDLAGFGNV PLSYYGMLQA RKLLQGYGCD  420
GYRIREENGC VLMSWQDRPL FSVSAWRCRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0GRAS family protein