PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0049961
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family EIL
Protein Properties Length: 618aa    MW: 69892.7 Da    PI: 5.2652
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0049961genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3514.83.9e-157484281353
                             XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                    EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvega 87 
                             +el++rmw+d+m+lkrl+e++ +    ke+ + ++k+++s+eqarrkkmsraQDgiLkYMlk+mevc+aqGfvYgiipekgkpv+ga
  RcHm_v2.0_Chr5g0049961  48 DELERRMWRDKMRLKRLREQTTKG--GKEV-IVTAKQRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPEKGKPVTGA 131
                             79*******************995..5999.777789************************************************** PP

                             XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH-- CS
                    EIN3  88 sdsLraWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWP 174
                             sd+Lr+WWk+kv+fdrngpaaiskyqa+n++++++++++     ++h+l+elqDTtlgSLLsalmqhcdppqrrfplekgv+pPWWP
  RcHm_v2.0_Chr5g0049961 132 SDNLREWWKDKVRFDRNGPAAISKYQADNAVPGRNDGCNP-IGPTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVPPPWWP 217
                             **************************************88.9********************************************* PP

                             -S--HHHHHHT--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XX CS
                    EIN3 175 tGkelwwgelglskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvs 261
                             t +e+ww+elgl+kdqg+ppykkphdlkkawkv+vLtavikhmsp+i++ir+l+rqsk+lqdkm+akes ++l+++nqee+++++++
  RcHm_v2.0_Chr5g0049961 218 TANEEWWPELGLPKDQGPPPYKKPHDLKKAWKVGVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESSTWLAIINQEESLARELY 304
                             *************************************************************************************** PP

                             XXXX...XXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXX...............................XXXXXXXXXXXX CS
                    EIN3 262 ahss...slrkqspkvtlsceqkedvegkkeskikhvqavktta...............................gfpvvrkrkkkp 314
                             ++s    s+   s ++++++ +++dveg +++   +vq++k  +                               ++++ rkrk ++
  RcHm_v2.0_Chr5g0049961 305 PNSCpplSTAGASGSLVINDCSEYDVEGAEDEPNFDVQECKPDNlhssnfgmeimreglqvhqptsfpvkgevitNLDFMRKRK-PS 390
                             **4444677779***************777777699******99***************************************9.77 PP

                             XXXXXXXXX......XXXXXXX.XXXXXXXXXXXXXXXX CS
                    EIN3 315 sesakvsskevsrtcqssqfrgsetelifadknsisqne 353
                             s+ ++v +++ ++tc+  q+++se +++f+d++s+++++
  RcHm_v2.0_Chr5g0049961 391 SDLNMVVDQK-IYTCEFVQCPYSEFRHGFHDRTSRDNHQ 428
                             7777777776.5*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 618 aa     Download sequence    
MIMMFDEMGF CGDLDFISTT PGGEVAIPQA ETEATVEDDY TDDEIDVDEL ERRMWRDKMR  60
LKRLREQTTK GGKEVIVTAK QRQSQEQARR KKMSRAQDGI LKYMLKMMEV CKAQGFVYGI  120
IPEKGKPVTG ASDNLREWWK DKVRFDRNGP AAISKYQADN AVPGRNDGCN PIGPTPHTLQ  180
ELQDTTLGSL LSALMQHCDP PQRRFPLEKG VPPPWWPTAN EEWWPELGLP KDQGPPPYKK  240
PHDLKKAWKV GVLTAVIKHM SPDIAKIRKL VRQSKCLQDK MTAKESSTWL AIINQEESLA  300
RELYPNSCPP LSTAGASGSL VINDCSEYDV EGAEDEPNFD VQECKPDNLH SSNFGMEIMR  360
EGLQVHQPTS FPVKGEVITN LDFMRKRKPS SDLNMVVDQK IYTCEFVQCP YSEFRHGFHD  420
RTSRDNHQLS CPFSNRSSEF GASNFLVNEI KPVIFPQSFV QTKAAAPSAK PVPPSFDLSG  480
GVPEDGQKMI SELMSFYDSN VQGDKNANPN SSATNGQNFS QPKVAHQQDE YFRGQGVRLD  540
GNFFEESNIS SNHHLFPREE GQFEQFKVVS SPFETNHNSN FPMMFGSPFD LASFDYKEDL  600
QGLALPMEKQ SETSIWFQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20770.10.0EIL family protein