PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0049141
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family YABBY
Protein Properties Length: 233aa    MW: 25403.2 Da    PI: 9.0319
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0049141genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY2061.4e-6342052170
                   YABBY   2 dvfssseqvCyvqCnfCntilavsvPs......tslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee............ 70 
                             +++ sse+vCyv+Cn CntilavsvP       ++  +vvtvrCGhC++llsvn+  as +  ++s   +++               
  RcHm_v2.0_Chr5g0049141   4 ELMASSERVCYVHCNLCNTILAVSVPAfngpltAATTTVVTVRCGHCANLLSVNIGAASLQYHSTSPSPTTTAAAtphphphtqhyh 90 
                             67899********************95333333678899****************99984444433322222221234778888899 PP

                   YABBY  71 .........lleelkveeenlksnvekeesastsvssekl.......senedeevprvppvirPPekrqrvPsaynrfikeeiqrik 141
                                       +++  +e+++ ++ + +++s+sts + +k+       +++++ + prv p irPPekrqrvPsaynrfikeeiqrik
  RcHm_v2.0_Chr5g0049141  91 shpnifahqKQHQVSSEDSSSNKDYGSSSSSSTSSKCNKFaaapafdQSSTTVDQPRVSP-IRPPEKRQRVPSAYNRFIKEEIQRIK 176
                             999977643222222222333333333333333333334478887766667778899888.9************************* PP

                   YABBY 142 asnPdishreafsaaaknWahfPkihfgl 170
                             a+nPdishreafs+aaknWahfP+ihfgl
  RcHm_v2.0_Chr5g0049141 177 AANPDISHREAFSTAAKNWAHFPHIHFGL 205
                             ***************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    
MSMELMASSE RVCYVHCNLC NTILAVSVPA FNGPLTAATT TVVTVRCGHC ANLLSVNIGA  60
ASLQYHSTSP SPTTTAAATP HPHPHTQHYH SHPNIFAHQK QHQVSSEDSS SNKDYGSSSS  120
SSTSSKCNKF AAAPAFDQSS TTVDQPRVSP IRPPEKRQRV PSAYNRFIKE EIQRIKAANP  180
DISHREAFST AAKNWAHFPH IHFGLKLESN KQAKLDNQTF AGEGTQKSTN GFY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.11e-44YABBY family protein