PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0046591
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family RAV
Protein Properties Length: 366aa    MW: 41938.4 Da    PI: 7.4954
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0046591genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP230.96.7e-1056104155
                     AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                             +++kGV     +g W A+I+       +  r++lg+f ++ +Aa a++ a+ kl++
  RcHm_v2.0_Chr5g0046591  56 TKFKGVVLQQ-NGHWGAQIYA------NhNRVWLGTFNSEVDAAMAYDSAAIKLRN 104
                             699***9877.8******999......44**********99*************97 PP
2B380.71.4e-25184281184
                             EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT-- CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk 75 
                             f+k+ltpsdv+k++rlv+pk++a+++            + +++ +++l+++de+ r W+++++y+k+s+++v+t+GW++Fvk+  Lk
  RcHm_v2.0_Chr5g0046591 184 FQKELTPSDVGKLNRLVIPKNYATKYfpridesmqeglDDNPAPDVQLSFYDENMRPWKFRYCYWKSSQSFVFTRGWNRFVKESLLK 270
                             99*********************************99988888999***************************************** PP

                             TT-EEEEE..E CS
                      B3  76 egDfvvFk..l 84 
                             ++D++ F+  +
  RcHm_v2.0_Chr5g0046591 271 ANDIIRFYecH 281
                             *******9543 PP
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    
MAMEMEEDLS SMVSNAGTTR QKRIYQAEAS VSSITGFLVQ ESKRLSHGSS NLSANTKFKG  60
VVLQQNGHWG AQIYANHNRV WLGTFNSEVD AAMAYDSAAI KLRNGECQRN FAWTKVTDQE  120
PYFQNLYSQE AVLNMIKDGT YQARFLEFRM SHQAAESMQK IGMAECNSAR VQQSKRDILH  180
KQLFQKELTP SDVGKLNRLV IPKNYATKYF PRIDESMQEG LDDNPAPDVQ LSFYDENMRP  240
WKFRYCYWKS SQSFVFTRGW NRFVKESLLK ANDIIRFYEC HIREGDKEAK SFYMIKIDRA  300
ESSDVIVENA GLCVSPALTP LHAKKFGEEK DDIKTQIAEV IDETPQVNGD NKRIRLFGVC  360
MVVGEN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.12e-92RAV family protein