PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr5g0045241 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 220aa MW: 24902.4 Da PI: 9.6948 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 55.4 | 7.5e-18 | 4 | 44 | 12 | 51 |
HHHHHH.HHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 12 tfskRr.ngilKKAeELSvLCdaevaviifsstgklyeyss 51 tf +Rr +++ KKA+ELS+LC+aevavi f s+gkl+eyss RcHm_v2.0_Chr5g0045241 4 TFGRRRhATLVKKAQELSILCAAEVAVIAFTSDGKLHEYSS 44 666665269******************************96 PP | |||||||
2 | K-box | 37.2 | 1.2e-13 | 80 | 170 | 7 | 97 |
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 +++ee++ +s+++ l Lk + L+ + +++G+ L+ Ls +eL Leqq + +l ++ +kK+ell++ +++++ +e+++ +e+++ RcHm_v2.0_Chr5g0045241 80 TAAEEKDPKSSDKVLHALKGQHAALKLDKQRRMGKALDGLSREELYALEQQQKWALVSVMKKKEELLVRLLHRSKAREQQAIQEKEN 166 447788899999999***********999********************************************************** PP K-box 94 Lrkk 97 Lr+ RcHm_v2.0_Chr5g0045241 167 LRRG 170 *986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence |
MTETFGRRRH ATLVKKAQEL SILCAAEVAV IAFTSDGKLH EYSSTSSVEH TLSRYKNNKG 60 GQVLPTKVES DPPKECRRET AAEEKDPKSS DKVLHALKGQ HAALKLDKQR RMGKALDGLS 120 REELYALEQQ QKWALVSVMK KKEELLVRLL HRSKAREQQA IQEKENLRRG YEVRTTEKPY 180 LQLFPENSTS FCTSSKAVSL SNCPTENMDI SLHLGLSYNS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13790.1 | 2e-27 | MIKC_MADS family protein |