PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0042621
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 527aa    MW: 58345 Da    PI: 5.7132
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0042621genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS443.41.5e-1351575271374
                    GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                             l+e+L +cA+a++++d++ +++l+++l++++s +g+p+qRl ay++e+L arla+++s +y++l+++e +   s+e l+++++++e+
  RcHm_v2.0_Chr5g0042621 157 LKEVLCACAKALAENDMSTTEWLMSNLRQMVSVSGEPIQRLGAYMLEGLVARLASTGSCIYASLRCKEPA---SAELLSYMHILYEI 240
                             5789*****************************************************************9...9************* PP

                    GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeel 172
                             +P++kf+++ aN aI ea++ e+rvHiiDf+i qG QW++L+qaLa+Rp+gpp++R+Tg+++++s   +   l  +g+ L+++Ae+ 
  RcHm_v2.0_Chr5g0042621 241 CPYFKFGYMSANGAIAEAMKDESRVHIIDFQIAQGSQWITLIQALATRPGGPPHIRLTGIDDSASAyaRGGGLALVGKMLSRLAESY 327
                             **************************************************************988899999**************** PP

                    GRAS 173 gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfle 259
                             +vpfef++ +  + ++++le+L v++gEalaVn++++lh+++desvs++++rd++L++vkslsPkvv++veqe+++n+++F  rf+e
  RcHm_v2.0_Chr5g0042621 328 KVPFEFHA-AGISASEVQLEDLGVQTGEALAVNFAFMLHHMPDESVSIQNPRDRLLRVVKSLSPKVVTLVEQESNTNTAPFCPRFAE 413
                             ********.7889************************************************************************** PP

                    GRAS 260 aleyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvks 346
                             +++y+sa+fds+++ lpre++eri+vE+++l+reivn++aceg er+er+e l+kWr+r+ +aGF+p+pls+ +++++k+ll+++++
  RcHm_v2.0_Chr5g0042621 414 TFSYFSAVFDSIDVALPREHKERINVEQHCLAREIVNIIACEGVERVERTELLSKWRSRFIMAGFSPYPLSSIINATIKTLLQRYSE 500
                             **************************************************************************************6 PP

                    GRAS 347 dgyrveeesgslvlgWkdrpLvsvSaWr 374
                             + y++ee++g+l+lgW++++Lv+ +aWr
  RcHm_v2.0_Chr5g0042621 501 K-YTLEERDGALYLGWMNQALVTSCAWR 527
                             6.*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    
MIMELHNKGR GNVSHRFGEQ PVEEPESYGF PPMHNVVIQG THLSAHNLDQ YESSSATSNY  60
HVQSSPSSLS FSANGSPTSQ PDLQSNQSSG SPINQSSLTN DGGGLSHKIR ELESVLLGNE  120
SDVLDIYGIT SQVRHNQVSS EEQNWKQMME MISRGDLKEV LCACAKALAE NDMSTTEWLM  180
SNLRQMVSVS GEPIQRLGAY MLEGLVARLA STGSCIYASL RCKEPASAEL LSYMHILYEI  240
CPYFKFGYMS ANGAIAEAMK DESRVHIIDF QIAQGSQWIT LIQALATRPG GPPHIRLTGI  300
DDSASAYARG GGLALVGKML SRLAESYKVP FEFHAAGISA SEVQLEDLGV QTGEALAVNF  360
AFMLHHMPDE SVSIQNPRDR LLRVVKSLSP KVVTLVEQES NTNTAPFCPR FAETFSYFSA  420
VFDSIDVALP REHKERINVE QHCLAREIVN IIACEGVERV ERTELLSKWR SRFIMAGFSP  480
YPLSSIINAT IKTLLQRYSE KYTLEERDGA LYLGWMNQAL VTSCAWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.10.0GRAS family protein