PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr5g0042581

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

WRKY

Protein Properties

Length: 581aa MW: 63335.9 Da PI: 6.9817

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr5g0042581	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.3	4.9e-31	223	280	2	60
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk ers+ +++++ei+Y+g+H+h+k RcHm_v2.0_Chr5g0042581 223 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-EGHITEIIYKGTHDHPK 280 8**************************************.*************85 PP
2	WRKY	106.2	1.7e-33	398	456	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+ RcHm_v2.0_Chr5g0042581 398 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 456 59********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 581 aa Download sequence
MDSTAPECPP PPSDELDPGL TDFHPGSDPA FSTSRSSGGG AKYKLMSPAK LPISRSPCLT 60 IPPGLTPTSF LESPVLLSNM KAEPSPTTGS FLNPKMVYGT ANSTYSATMV CSDERNSGSF 120 EFKPHSRLNM VTMDYDHQSN EQAVQVQGQG QSQSHASPPL VKSEMAGSSN QSGLPAPVHM 180 VSSGASAPVE GDADDISQRA NPNSGVQTSQ FDHKGSGPSV SSDDGYNWRK YGQKHVKGSE 240 FPRSYYKCTH PNCEVKKLFE RSHEGHITEI IYKGTHDHPK PQPSRRYNTG AMMNVQEERS 300 DKALSLTGRD DKSSSMYGQM SCTNEPNSTP ELSPVRGNDG SVEGTGSLST RILDEVDDDD 360 PFSKRRRMDV GGIDVTPVVK PIREPRVVVQ TLSEVDILDD GYRWRKYGQK VVRGNPNPRS 420 YYKCTNAGCP VRKHVERASH DPKAVITTYE GKHNHDVPTA RTSSHDTSGP TPVNAPSRIR 480 TEENDTISLD LGVGMSSAAE NRSNNHLRLH SELAERQTHP SSNFKAVQTT PAPSYYGVLN 540 SGMNQYGSRE NPSESRSIEI PPLNHSSYPY PQNMGRVLTG P

Sequence ? help Back to Top

Protein Sequence Length: 581 aa Download sequence

MDSTAPECPP PPSDELDPGL TDFHPGSDPA FSTSRSSGGG AKYKLMSPAK LPISRSPCLT  60
IPPGLTPTSF LESPVLLSNM KAEPSPTTGS FLNPKMVYGT ANSTYSATMV CSDERNSGSF  120
EFKPHSRLNM VTMDYDHQSN EQAVQVQGQG QSQSHASPPL VKSEMAGSSN QSGLPAPVHM  180
VSSGASAPVE GDADDISQRA NPNSGVQTSQ FDHKGSGPSV SSDDGYNWRK YGQKHVKGSE  240
FPRSYYKCTH PNCEVKKLFE RSHEGHITEI IYKGTHDHPK PQPSRRYNTG AMMNVQEERS  300
DKALSLTGRD DKSSSMYGQM SCTNEPNSTP ELSPVRGNDG SVEGTGSLST RILDEVDDDD  360
PFSKRRRMDV GGIDVTPVVK PIREPRVVVQ TLSEVDILDD GYRWRKYGQK VVRGNPNPRS  420
YYKCTNAGCP VRKHVERASH DPKAVITTYE GKHNHDVPTA RTSSHDTSGP TPVNAPSRIR  480
TEENDTISLD LGVGMSSAAE NRSNNHLRLH SELAERQTHP SSNFKAVQTT PAPSYYGVLN  540
SGMNQYGSRE NPSESRSIEI PPLNHSSYPY PQNMGRVLTG P

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G26640.2	0.0	WRKY family protein