PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr5g0040801

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

WRKY

Protein Properties

Length: 542aa MW: 59233.1 Da PI: 6.7932

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr5g0040801	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96	2.5e-30	295	353	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ kg+++pr+YYrCt+ gCpv+k+v+r+aed++++++tYeg+Hnh+ RcHm_v2.0_Chr5g0040801 295 SDGCQWRKYGQKMAKGNPCPRAYYRCTMGtGCPVRKQVQRCAEDKTILITTYEGQHNHP 353 7*************************99**************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 542 aa Download sequence
MDPAASDHSI HSSRIEHVLS PATADGKRVV HDELDFFADH HKGCLKETDQ TLEVKEDMAH 60 ENHLDTGLNL LTTYTSTSDK SSTDDGSTSH SMEDHKQTIS ELEVVQAELG RMNVENQRLR 120 VMITQVNNNY KSLQVHLVEF MQRQQNQSVQ QHKMVINGSA PEEKQIMNNI VPRQFMDMGR 180 AANITHHEKN ELVSHSSLDM VRSNNDCSLS PPIVESMDHC KSTVHRGSKR TSAGAEDSPE 240 RQEFQAGSPG WVPKKIPKLN SGDADVDHQA SEETMSMIKK ARVSVRARSE ASMISDGCQW 300 RKYGQKMAKG NPCPRAYYRC TMGTGCPVRK QVQRCAEDKT ILITTYEGQH NHPLPPTAMA 360 MASTTSAAAS MLLSGSMPSA DHHPHHALIN SSSNTFLQRT AIHHPQLPNC PPSFATLSAS 420 APFPTVTLDL TRSPATSSET MALNQLPNFS QNMPLPHALG HALCNNESKL SLLDGFRGLD 480 ATSNHSILAD KVSAATAAIT ADPNFTAALV AAITSIIGNN VHSNNNTNSS NITTRNSSDD 540 NT

Sequence ? help Back to Top

Protein Sequence Length: 542 aa Download sequence

MDPAASDHSI HSSRIEHVLS PATADGKRVV HDELDFFADH HKGCLKETDQ TLEVKEDMAH  60
ENHLDTGLNL LTTYTSTSDK SSTDDGSTSH SMEDHKQTIS ELEVVQAELG RMNVENQRLR  120
VMITQVNNNY KSLQVHLVEF MQRQQNQSVQ QHKMVINGSA PEEKQIMNNI VPRQFMDMGR  180
AANITHHEKN ELVSHSSLDM VRSNNDCSLS PPIVESMDHC KSTVHRGSKR TSAGAEDSPE  240
RQEFQAGSPG WVPKKIPKLN SGDADVDHQA SEETMSMIKK ARVSVRARSE ASMISDGCQW  300
RKYGQKMAKG NPCPRAYYRC TMGTGCPVRK QVQRCAEDKT ILITTYEGQH NHPLPPTAMA  360
MASTTSAAAS MLLSGSMPSA DHHPHHALIN SSSNTFLQRT AIHHPQLPNC PPSFATLSAS  420
APFPTVTLDL TRSPATSSET MALNQLPNFS QNMPLPHALG HALCNNESKL SLLDGFRGLD  480
ATSNHSILAD KVSAATAAIT ADPNFTAALV AAITSIIGNN VHSNNNTNSS NITTRNSSDD  540
NT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62300.1	1e-94	WRKY family protein