PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0037031
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 573aa    MW: 63920.8 Da    PI: 6.2976
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0037031genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS437.97.2e-1342035721373
                    GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                             l++lL++cAea+s++++   ++l+++ +  +s +g+p+qRl ay++e+L ar   s+s++y+al+++e +   s++ l+++++++e+
  RcHm_v2.0_Chr5g0037031 203 LRQLLIACAEALSDNNMDGFEKLIEKARGAVSISGEPIQRLGAYMVEGLVARKEASGSNIYRALRCREPE---SDDLLSYMHILYEI 286
                             689******************************************************************9...9************* PP

                    GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeel 172
                             +P+lkf++++aN aI +a  +e+r+HiiDf+i qG+QW++LlqaLa+Rp+g+p++RiTg+++p s+  + + le++g+rL+ + e++
  RcHm_v2.0_Chr5g0037031 287 CPYLKFGYMAANGAIADACRNEDRIHIIDFQIAQGTQWVTLLQALAARPSGAPHVRITGIDDPVSKyaRGDGLEAVGRRLKAISEKF 373
                             ***************************************************************999999****************** PP

                    GRAS 173 gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfle 259
                             ++p+ef+  v     d+++++L+v+pgEalaVn+ lqlh+++desv+++++rd +L++vkslsPkv ++veqe+++n+++Fl+rf+e
  RcHm_v2.0_Chr5g0037031 374 NIPVEFHG-VPVFAPDVTPDMLDVRPGEALAVNFPLQLHHTPDESVDVNNPRDGLLRIVKSLSPKVTTLVEQESNTNTTPFLNRFIE 459
                             ********.688899************************************************************************ PP

                    GRAS 260 aleyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvks 346
                             +l+yy a+f+s++++lpr+s+eri+vE+++l+r+ivnv+aceg+er+erhe ++kW++rl++aGF+++pls+++++ +++llr ++ 
  RcHm_v2.0_Chr5g0037031 460 TLDYYLAMFESIDVTLPRNSKERINVEQHCLARDIVNVIACEGKERVERHELFGKWKSRLTMAGFRQYPLSSYVNSVIRSLLRCYS- 545
                             **********************************************************************************9999. PP

                    GRAS 347 dgyrveeesgslvlgWkdrpLvsvSaW 373
                             + y++ee++g+++lgWk+r+Lvs+SaW
  RcHm_v2.0_Chr5g0037031 546 EHYKLEEKDGAMLLGWKERNLVSASAW 572
                             66************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 573 aa     Download sequence    
MDSRQHFGFS ETGAGYFAGS HPTVPNRLLG SLKLDIGNSP NSHFSTHFDS DTVTTLSDYQ  60
EQLSSTENLS GVSHSSNSPF ETNSYISRLS LSPSVDCRRD SLQLSSGRAS LLQDANCSPN  120
IKYALQELES ALMGPDEEEV TATNIFGETS RRKGQRSLSW NQERAGAHVM QHQTSFVSGH  180
RQSEKRHKVL DEASPQGFPA DNLRQLLIAC AEALSDNNMD GFEKLIEKAR GAVSISGEPI  240
QRLGAYMVEG LVARKEASGS NIYRALRCRE PESDDLLSYM HILYEICPYL KFGYMAANGA  300
IADACRNEDR IHIIDFQIAQ GTQWVTLLQA LAARPSGAPH VRITGIDDPV SKYARGDGLE  360
AVGRRLKAIS EKFNIPVEFH GVPVFAPDVT PDMLDVRPGE ALAVNFPLQL HHTPDESVDV  420
NNPRDGLLRI VKSLSPKVTT LVEQESNTNT TPFLNRFIET LDYYLAMFES IDVTLPRNSK  480
ERINVEQHCL ARDIVNVIAC EGKERVERHE LFGKWKSRLT MAGFRQYPLS SYVNSVIRSL  540
LRCYSEHYKL EEKDGAMLLG WKERNLVSAS AWH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.10.0GRAS family protein