PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr5g0032861 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | SBP | ||||||||
Protein Properties | Length: 195aa MW: 21464.6 Da PI: 9.1014 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 132.1 | 1.9e-41 | 73 | 148 | 2 | 77 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cq+++C adl +ak yhrrhkvCe+hska+ v+vsg +qrfCqqCsrfhel efDe+krsCrrrLa+hnerrrk++ RcHm_v2.0_Chr5g0032861 73 CQADRCGADLGDAKIYHRRHKVCEFHSKAAIVVVSGARQRFCQQCSRFHELAEFDEAKRSCRRRLAGHNERRRKSS 148 **************************************************************************87 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence |
MERQTWKEKM LNKNADEVED DSDEDETCGH GSGLISIRFE ENEKHKVKAA GSTGKKSGSS 60 SGGGGGASSA PSCQADRCGA DLGDAKIYHR RHKVCEFHSK AAIVVVSGAR QRFCQQCSRF 120 HELAEFDEAK RSCRRRLAGH NERRRKSSGE PYGEGSSRRG ISHQYRSEST QATTKYHMTS 180 PAPGNTANSK HFQIS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53160.1 | 6e-50 | SBP family protein |