PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr5g0032341 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 171aa MW: 19626.3 Da PI: 8.4884 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.5 | 9.4e-18 | 16 | 69 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ ++t++q++ Le+ F +++++ +++ LAk+lg++ rqV +W+qN+Ra++k RcHm_v2.0_Chr5g0032341 16 KKKRLTQDQVKLLERSFSSDNKLEPDRKLLLAKQLGIPARQVAIWYQNKRARWK 69 56679************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 106.2 | 2.5e-34 | 16 | 107 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 kk+rl+++qvklLE+sF++++kLep+rK la++Lg+ +rqva+W+qn+RAR+kt+ lE y+a++ ++++ +e+++Lek+ve+L+ RcHm_v2.0_Chr5g0032341 16 KKKRLTQDQVKLLERSFSSDNKLEPDRKLLLAKQLGIPARQVAIWYQNKRARWKTQSLELGYNAIQVQLETALAEKRKLEKDVERLK 102 9************************************************************************************** PP HD-ZIP_I/II 89 eelke 93 el++ RcHm_v2.0_Chr5g0032341 103 GELNR 107 99875 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence |
MDFFQTPSNK NQFHHKKKRL TQDQVKLLER SFSSDNKLEP DRKLLLAKQL GIPARQVAIW 60 YQNKRARWKT QSLELGYNAI QVQLETALAE KRKLEKDVER LKGELNRAHE LLLDLNNQRQ 120 VGGDNHPVVC SVFSASCDQE GAASSSLQLG DHVVNHEVKE FEELYACLIG M |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53980.1 | 2e-37 | HD-ZIP family protein |