PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr5g0031541

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

TCP

Protein Properties

Length: 438aa MW: 48250.5 Da PI: 7.2113

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr5g0031541	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	87.8	2.5e-27	47	151	1	66
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...................... 65 a+g+kdrhsk+ T++g+RdRRvRl a++a++f+d+qd+LG+d++sk+++WL+++ak+ai+el ++ RcHm_v2.0_Chr5g0031541 47 ATGRKDRHSKVQTAKGPRDRRVRLAAHTAIQFYDVQDRLGYDRPSKAVDWLIRKAKAAIDELDELppwnpnsisvqttssptvpisv 133 589**************************************************************8877777766543333333333 PP TCP 66 .................s 66 s RcHm_v2.0_Chr5g0031541 134 aqdtqnarlhfsmveapS 151 332222222222222220 PP

Sequence ? help Back to Top
Protein Sequence Length: 438 aa Download sequence
MGESHNNLHH RATTSSSAAS RLGLGIRTAS SSTTSEIVEA RGHILRATGR KDRHSKVQTA 60 KGPRDRRVRL AAHTAIQFYD VQDRLGYDRP SKAVDWLIRK AKAAIDELDE LPPWNPNSIS 120 VQTTSSPTVP ISVAQDTQNA RLHFSMVEAP SSLSANRRGA MVGSSGVAEL VNQNSSNFLP 180 PSMDSDSIAD TIKSFFPMGA ATAAETQSFH PASYPPDLLS RTSSQSQDLR LSLHSFQDPI 240 LLHHHHQAHH HHHQTHHENE QAFLTPNHLG FDSSAATWTE HHQQQQQQQQ AELNRFQRMV 300 TWNNAGGDSN NNNNSSSGGG VEFTFNSQPQ TQSQSPTLQP FLFGQNQFFS SQRGPLQSSN 360 TPSVHAWIDH NDLSDHQHQM APSIHSHHHH HHQQSSISSM GFASGGFSGF HIPARIQGEE 420 EHDGISDKPS SASSNSRH

Sequence ? help Back to Top

Protein Sequence Length: 438 aa Download sequence

MGESHNNLHH RATTSSSAAS RLGLGIRTAS SSTTSEIVEA RGHILRATGR KDRHSKVQTA  60
KGPRDRRVRL AAHTAIQFYD VQDRLGYDRP SKAVDWLIRK AKAAIDELDE LPPWNPNSIS  120
VQTTSSPTVP ISVAQDTQNA RLHFSMVEAP SSLSANRRGA MVGSSGVAEL VNQNSSNFLP  180
PSMDSDSIAD TIKSFFPMGA ATAAETQSFH PASYPPDLLS RTSSQSQDLR LSLHSFQDPI  240
LLHHHHQAHH HHHQTHHENE QAFLTPNHLG FDSSAATWTE HHQQQQQQQQ AELNRFQRMV  300
TWNNAGGDSN NNNNSSSGGG VEFTFNSQPQ TQSQSPTLQP FLFGQNQFFS SQRGPLQSSN  360
TPSVHAWIDH NDLSDHQHQM APSIHSHHHH HHQQSSISSM GFASGGFSGF HIPARIQGEE  420
EHDGISDKPS SASSNSRH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15030.2	4e-83	TCP family protein