PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0030041
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family BES1
Protein Properties Length: 325aa    MW: 34888.7 Da    PI: 8.0609
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0030041genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822202.31.5e-6221441149
                  DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssas 87 
                             ++++r p+wkErEnnkrRERrRRaiaaki+aGLR++Gn+klpk++DnneVlkALc+eAGw+ve DGttyrkg+kp e+++++  s+ 
  RcHm_v2.0_Chr5g0030041   2 TSGTRLPSWKERENNKRRERRRRAIAAKIFAGLRMYGNFKLPKHCDNNEVLKALCNEAGWTVELDGTTYRKGCKPVERKDIVDGSTA 88 
                             5899*********************************************************************************** PP

                  DUF822  88 aspesslqsslkssalaspvesysaspksssfpspssldsislasa..asllpvlsvlslvsss 149
                             asp+ss++        +s  +sy++sp sssfpsp+s++ + +++   +sl+p+l++ls+ sss
  RcHm_v2.0_Chr5g0030041  89 ASPCSSYH--------PSNYASYNPSPGSSSFPSPASSSYAANQNVegSSLIPWLKHLSSGSSS 144
                             ********........99****************998887766655679*********996665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    
MTSGTRLPSW KERENNKRRE RRRRAIAAKI FAGLRMYGNF KLPKHCDNNE VLKALCNEAG  60
WTVELDGTTY RKGCKPVERK DIVDGSTAAS PCSSYHPSNY ASYNPSPGSS SFPSPASSSY  120
AANQNVEGSS LIPWLKHLSS GSSSASSSKL PNIYIHGGSI SAPVTPPLSS PTARTPRMNT  180
DWDEQSARPG WGGQQYSFLP SSTPPSPGRQ IIPDPEWFSG LRIPHGPTSP TFSLVSSNPF  240
GFKEEALAGG GSRMWTPGQS GTCSPAIAAG SDHTADIPMS EVISDEFAFG SCNTAGLVKA  300
WEGERIHEES GSDDLELTLG CSKTR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78700.11e-120BES1 family protein