PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr5g0029541

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

DBB

Protein Properties

Length: 285aa MW: 30474.1 Da PI: 4.6407

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr5g0029541	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	19.4	2.2e-06	4	47	5	42
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 C+ +e e++ C ++ lC C ++ H H++vpl RcHm_v2.0_Chr5g0029541 4 QCNVCETAEANVLCCADEAALCWACDEKVHAAnklaskHQRVPL 47 7****99*******************66899999999986 PP
2	zf-B_box	26.3	1.6e-08	52	92	3	37
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 ++kC+ ++e +fC +++ llC++C ++ H H RcHm_v2.0_Chr5g0029541 52 MPKCDICQEGVGYFFCLEDRALLCRNCDVAVHTAnsfvsgH 92 799****98******************9544555556 PP

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence
MKIQCNVCET AEANVLCCAD EAALCWACDE KVHAANKLAS KHQRVPLSAS HMPKCDICQE 60 GVGYFFCLED RALLCRNCDV AVHTANSFVS GHRRFLLTGI KVGPESSPPG SGGGGDGVAG 120 SSSSVKPDPG AAKKCEANIQ LAEECKVAPS SVAGMSFAGG SAAGSVPQWP IDEFLGFTDF 180 DQSFGYMDNG SSKADCGKLG ASDSSILRSS EEEQEEYECI GQVPEISWMV PEVPSPPTSS 240 GLYWPKTYQN PSDSAVFVPD VCYSEMENPL HCQQNGTFSK RRRQF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78600.1	4e-74	DBB family protein