PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0027011
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 341aa    MW: 38547.1 Da    PI: 6.9342
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0027011genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1683.1e-52111361129
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                             lppGfrFhP+deelv++yL kkv++++ +l   + evd++k+ePwd+p+++  + kewyf+s+rd+kyatg r+nrat++gyWkatg
  RcHm_v2.0_Chr5g0027011  11 LPPGFRFHPRDEELVCDYLMKKVTHSNSTL---MIEVDLNKCEPWDIPESACVGGKEWYFYSQRDRKYATGLRTNRATATGYWKATG 94 
                             79***********************99666...889************7777799******************************** PP

                     NAM  88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                             kd+++++k+++lvg++ktLvfy+grapkg+k+dWvmhe+rle
  RcHm_v2.0_Chr5g0027011  95 KDRPIFRKETTLVGMRKTLVFYQGRAPKGRKSDWVMHEFRLE 136
                             ***************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    
MSNISMVEAK LPPGFRFHPR DEELVCDYLM KKVTHSNSTL MIEVDLNKCE PWDIPESACV  60
GGKEWYFYSQ RDRKYATGLR TNRATATGYW KATGKDRPIF RKETTLVGMR KTLVFYQGRA  120
PKGRKSDWVM HEFRLEDPFG SPEISSLKED WVLCRVFYKN RELIAAKPSM GSSISCYDDD  180
TGSSSHQLPA LMDSYISFDG QTHQQQQQHH HDYEYQHHQQ VPCFSIDTLF SQNQVTINPI  240
FTTQNSNIME QNVPSTGCGQ SSNAATTTFL DTANFSCDNR KVLKAVLSQL TKMESSCYPS  300
TPSSVLKGSS PQSFGGEAAG SSSDNYLSDH QVGMPNVWSH Y
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.21e-109NAC family protein