PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr5g0025771

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB

Protein Properties

Length: 377aa MW: 42511.1 Da PI: 5.008

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr5g0025771	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.3	1.3e-16	17	64	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W++ Ed++l+ ++++G g+W++ ++ g+ R++k+c++rw +yl RcHm_v2.0_Chr5g0025771 17 RGPWSPSEDLRLISFIQKHGHGNWRALPKQAGLLRCGKSCRLRWINYL 64 89****************************99**********97 PP
2	Myb_DNA-binding	52.5	1.1e-16	70	115	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE+e ++++++ +G++ W++Ia++ + gRt++++k+ w+++l RcHm_v2.0_Chr5g0025771 70 RGNFTKEEEESIIKLHETWGNK-WSKIASHYP-GRTDNEIKNVWNTHL 115 89******************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence
MGGKGRTPCC DKSQVKRGPW SPSEDLRLIS FIQKHGHGNW RALPKQAGLL RCGKSCRLRW 60 INYLRPDLKR GNFTKEEEES IIKLHETWGN KWSKIASHYP GRTDNEIKNV WNTHLRKRLA 120 LKKSCGDDQS KELSSITSSS SSSSSASFQL SRGKPSVGAT AELVHQSNQE SNMSKNRNDC 180 ELPNSTTIQE KLDQNIPMEV TNQVRVDDAK GVKTLTISSS FSSHDSSNGS SSSQGGGISR 240 PDDLVFDFEG AYEPQIVDKE VFEIPFESDH DFWNMLDEFV PFQSNPEPLL PQADQTYQSS 300 NLELVESGKW LSYLESELGL EDSTKTEINN QDFVMKDATE QLVPEKYCDK LPKPAEIDQD 360 MDDYFGMWPS WPDNSGN

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence

MGGKGRTPCC DKSQVKRGPW SPSEDLRLIS FIQKHGHGNW RALPKQAGLL RCGKSCRLRW  60
INYLRPDLKR GNFTKEEEES IIKLHETWGN KWSKIASHYP GRTDNEIKNV WNTHLRKRLA  120
LKKSCGDDQS KELSSITSSS SSSSSASFQL SRGKPSVGAT AELVHQSNQE SNMSKNRNDC  180
ELPNSTTIQE KLDQNIPMEV TNQVRVDDAK GVKTLTISSS FSSHDSSNGS SSSQGGGISR  240
PDDLVFDFEG AYEPQIVDKE VFEIPFESDH DFWNMLDEFV PFQSNPEPLL PQADQTYQSS  300
NLELVESGKW LSYLESELGL EDSTKTEINN QDFVMKDATE QLVPEKYCDK LPKPAEIDQD  360
MDDYFGMWPS WPDNSGN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79180.1	2e-72	MYB family protein