PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr5g0023891 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 205aa MW: 23918.7 Da PI: 4.4547 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 55.2 | 9e-18 | 9 | 57 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+i+nk + tfskRr+g++ KA EL+ +C+ae+a++ +s+ gk+y + RcHm_v2.0_Chr5g0023891 9 KKIDNKAYLKATFSKRRKGLFRKAAELCDMCGAEIAILTVSPGGKFYNF 57 689********************************************99 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence |
MGRRKIEIKK IDNKAYLKAT FSKRRKGLFR KAAELCDMCG AEIAILTVSP GGKFYNFGHP 60 NVDSIIARYC GGETSCILHE NHDCVSHEDD DEDLEGEQEK EEDITDDVDE VEPIHEEEPI 120 HKAGEEKELI DLINREGDGT MRLSIDFSRK FWWNEEEPID PEQREMYIHS LMELRNNVIW 180 VLNDRNRRES YVKDYMGGDI SYDMI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 175 | 188 | RNNVIWVLNDRNRR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 2e-26 | M-type_MADS family protein |