PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr5g0022511

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 360aa MW: 41150 Da PI: 7.4693

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr5g0022511	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	173.7	5.3e-54	11	141	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWk 84 +ppGfrFhPtdeel+ +yL+kkv+ + ++l +vi+evd++k+ePwdL++ ++ + ++ewyfFs++dkky+tg+r+nrat++g+Wk RcHm_v2.0_Chr5g0022511 11 VPPGFRFHPTDEELLYYYLRKKVSYEAIDL-DVIREVDLNKLEPWDLKEkcRIGSgPQNEWYFFSHKDKKYPTGTRTNRATTAGFWK 96 69**************************.9***********952444443456************************ PP NAM 85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 atg+dk+++ ++++ +g++ktLvfy+grap+g+ktdW+mheyrle RcHm_v2.0_Chr5g0022511 97 ATGRDKAIHLSDSKRIGMRKTLVFYTGRAPHGQKTDWIMHEYRLE 141 *****************************************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence
MMSAGNGQLT VPPGFRFHPT DEELLYYYLR KKVSYEAIDL DVIREVDLNK LEPWDLKEKC 60 RIGSGPQNEW YFFSHKDKKY PTGTRTNRAT TAGFWKATGR DKAIHLSDSK RIGMRKTLVF 120 YTGRAPHGQK TDWIMHEYRL EDHHDNINVH EVQEDGWVVC RVFKKKNHIN RGFQPEFGHH 180 QEVEHDLITH MKASGSHAQV VLDHHQPKQN HHHHLEASLY DYPNTFDGSM HLPQLFSPES 240 AAAAAANNSS SFLSAPNTNM SALNPLDLEC SQNLLKLTST TAGSCGLNMQ QQQQQQEMRS 300 FNGDWSFLDK LLQSHHPQPQ DHYHVATAAA TTSTTQRLFP FQYLGCSGST THVDILKFSK

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence

MMSAGNGQLT VPPGFRFHPT DEELLYYYLR KKVSYEAIDL DVIREVDLNK LEPWDLKEKC  60
RIGSGPQNEW YFFSHKDKKY PTGTRTNRAT TAGFWKATGR DKAIHLSDSK RIGMRKTLVF  120
YTGRAPHGQK TDWIMHEYRL EDHHDNINVH EVQEDGWVVC RVFKKKNHIN RGFQPEFGHH  180
QEVEHDLITH MKASGSHAQV VLDHHQPKQN HHHHLEASLY DYPNTFDGSM HLPQLFSPES  240
AAAAAANNSS SFLSAPNTNM SALNPLDLEC SQNLLKLTST TAGSCGLNMQ QQQQQQEMRS  300
FNGDWSFLDK LLQSHHPQPQ DHYHVATAAA TTSTTQRLFP FQYLGCSGST THVDILKFSK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79580.1	1e-106	NAC family protein