PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr5g0020391 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 255aa MW: 29878.8 Da PI: 6.9964 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 80.9 | 8.3e-26 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +rien + rqvtf+kRr+g+lKK +ELSvLCd+++ ++ifsstgk++ y+s RcHm_v2.0_Chr5g0020391 9 SRIENRTTRQVTFAKRRAGLLKKTHELSVLCDVQIGLVIFSSTGKMFQYCS 59 59***********************************************96 PP | |||||||
2 | K-box | 57.9 | 4.5e-20 | 72 | 170 | 2 | 99 |
K-box 2 qkssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekel 87 q +sg++ +++++ l+ e++k++ke++ L ++ ++ GedL+ +++L++Le++Le+s++++R++K e+l +++++l+ k+ RcHm_v2.0_Chr5g0020391 72 QYASGTRiPQHSDTDFLNAEIRKIRKETQDLHLSLQRYTGEDLSCVRFEDLEELENRLEESVNRVRARKFEILQQEVHNLRLSTKQR 158 556777777889999************************************************************************ PP K-box 88 qeenkaLrkkle 99 +e+n +L + ++ RcHm_v2.0_Chr5g0020391 159 EEQNDELCHLIK 170 *****9988776 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence |
MGRGKIHISR IENRTTRQVT FAKRRAGLLK KTHELSVLCD VQIGLVIFSS TGKMFQYCSD 60 STSMEEIIRR YQYASGTRIP QHSDTDFLNA EIRKIRKETQ DLHLSLQRYT GEDLSCVRFE 120 DLEELENRLE ESVNRVRARK FEILQQEVHN LRLSTKQREE QNDELCHLIK EHQAAVFAHQ 180 HHYQQQMEME PKSEEHRQLM EQFPFCGEEQ PLLQLATTSM QPQFAYQAST SSLPPNPPQL 240 HDFSLNTPIY GIHKP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23260.2 | 5e-48 | MIKC_MADS family protein |