PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0019411
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family Trihelix
Protein Properties Length: 366aa    MW: 40072 Da    PI: 8.8416
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0019411genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix50.74.7e-1622110271
                trihelix   2 WtkqevlaLiearremeerlrrgk...................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegek 69 
                             Wt  e+++Liea++ +eer   ++                    ++ +W++v ++++++g+ rs++qC++kw+nl ++ykk++e ek
  RcHm_v2.0_Chr5g0019411  22 WTVGETMVLIEAKKMDEERRIMKRsgsgsgdhgadqtprsiskPAELRWKWVEDYCWKKGCLRSQNQCNDKWDNLMRDYKKVREYEK 108
                             *************95555443222234555666666666666699****************************************99 PP

                trihelix  70 kr 71 
                             + 
  RcHm_v2.0_Chr5g0019411 109 RS 110
                             86 PP

Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    
MAEIQGGNSG SFVMRDYRKG NWTVGETMVL IEAKKMDEER RIMKRSGSGS GDHGADQTPR  60
SISKPAELRW KWVEDYCWKK GCLRSQNQCN DKWDNLMRDY KKVREYEKRS VGVGENKELA  120
SYWKLEKSER KERNLPTNMV PQIYEALVEV VEKREMGRIV VGGGGASVSG SISPNPNIGY  180
AVERPIISGI HQSTVLSPPP VLQQHLIQPQ PISAMHLLPA PLAAQPPPPL PYSQPIPPVG  240
SDSDTSEHSD STAKRRRRGG GASGGGGDQQ QGISTSGTVS ASTSSELGTA ISRGASMIAE  300
ALQGCEESEE RRHREILSLH ERRIQIEESK TEINRQGING LVDAINKLAN SIHALASNSN  360
QSSAPK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.12e-58Trihelix family protein