PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr5g0019411 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | Trihelix | ||||||||
Protein Properties | Length: 366aa MW: 40072 Da PI: 8.8416 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 50.7 | 4.7e-16 | 22 | 110 | 2 | 71 |
trihelix 2 WtkqevlaLiearremeerlrrgk...................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegek 69 Wt e+++Liea++ +eer ++ ++ +W++v ++++++g+ rs++qC++kw+nl ++ykk++e ek RcHm_v2.0_Chr5g0019411 22 WTVGETMVLIEAKKMDEERRIMKRsgsgsgdhgadqtprsiskPAELRWKWVEDYCWKKGCLRSQNQCNDKWDNLMRDYKKVREYEK 108 *************95555443222234555666666666666699****************************************99 PP trihelix 70 kr 71 + RcHm_v2.0_Chr5g0019411 109 RS 110 86 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 366 aa Download sequence |
MAEIQGGNSG SFVMRDYRKG NWTVGETMVL IEAKKMDEER RIMKRSGSGS GDHGADQTPR 60 SISKPAELRW KWVEDYCWKK GCLRSQNQCN DKWDNLMRDY KKVREYEKRS VGVGENKELA 120 SYWKLEKSER KERNLPTNMV PQIYEALVEV VEKREMGRIV VGGGGASVSG SISPNPNIGY 180 AVERPIISGI HQSTVLSPPP VLQQHLIQPQ PISAMHLLPA PLAAQPPPPL PYSQPIPPVG 240 SDSDTSEHSD STAKRRRRGG GASGGGGDQQ QGISTSGTVS ASTSSELGTA ISRGASMIAE 300 ALQGCEESEE RRHREILSLH ERRIQIEESK TEINRQGING LVDAINKLAN SIHALASNSN 360 QSSAPK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35640.1 | 2e-58 | Trihelix family protein |