PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0018101
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family bHLH
Protein Properties Length: 286aa    MW: 32460.8 Da    PI: 6.7204
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0018101genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.13.6e-09170212855
                             HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             + r RR+ri ++ +eL +l+P+       K++ ae+L+ A +YIk Lq
  RcHm_v2.0_Chr5g0018101 170 AARERRRRITEKTNELGRLVPSG-----SKMNTAEMLQAAYKYIKFLQ 212
                             6699******************5.....5******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    
MAAMSTTFCA DWGSLQLLSN NHNPNPDYDH MFSFQTQQDE LAAARILGLD YSLALDDPNP  60
LLLSQTFFSD QEFLLPLDDH EYYYHDEYPK RQKTHQQFHS SFNGFVPSPS MIPEFVQPQL  120
PLPPPEIQIQ QQSAAQLYAN CRLSNKDIST SAKVKANSNG GVSLSPQSIA ARERRRRITE  180
KTNELGRLVP SGSKMNTAEM LQAAYKYIKF LQAQVAMLKL MDSMQEKKGQ RLHNQEGLHV  240
LASPIVQEKL YSEQKCLVSR EFVETLANNQ DIQSKPLLKD NIAKLL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34820.11e-22bHLH family protein