PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0018041
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WRKY
Protein Properties Length: 496aa    MW: 53634.9 Da    PI: 6.3891
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0018041genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.68.4e-31249307259
                             --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                    WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                             +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  RcHm_v2.0_Chr5g0018041 249 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 307
                             699************************998****************************7 PP

Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    
MCSLSMPIGM ENYQGDLTDI LRAGAATGSS SSSAYHSETM NSDSWQFSSD DNYSMKFSTS  60
MAMEEVEDAR DNFGDPFSSY IRDPLLHELS STSTGGFFSS PNSTPEMNIS VDMEARAAPF  120
GAHVPGHHHQ GEVTKRPCNN IFSRMLQISP GKLGGDVAGC DSVAVLGSPR GGGGGGGIKA  180
GPGGVMVGSD MINANSSKGC LLENTGVGVQ ISSPRNPGIK RRKSQAKKVV CIPAPAAANS  240
RPTGEVVPSD LWAWRKYGQK PIKGSPYPRG YYRCSSSKGC SARKQVERSR TDPNMLVITY  300
TSEHNHPWPT QRNALAGSTR SQPSKAGAGS KTSPNTAHHQ KPDSPAKEEQ KAAADSMNEN  360
NHVLSPVNAT VGSSSTVKEE FEDIEKLQLE LDHHDPHHQH DSDHHQFSNH DQVFPYRPSM  420
PEQSNNQSED FFADLGEIEA DPLNLLFSQC FTADEQQKGG NKAALDPFNL FDWSGDQNTN  480
TPNNNPSFGH EAKRHL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30650.11e-87WRKY family protein