PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr5g0018041 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | WRKY | ||||||||
Protein Properties | Length: 496aa MW: 53634.9 Da PI: 6.3891 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.6 | 8.4e-31 | 249 | 307 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+ RcHm_v2.0_Chr5g0018041 249 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 307 699************************998****************************7 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 496 aa Download sequence |
MCSLSMPIGM ENYQGDLTDI LRAGAATGSS SSSAYHSETM NSDSWQFSSD DNYSMKFSTS 60 MAMEEVEDAR DNFGDPFSSY IRDPLLHELS STSTGGFFSS PNSTPEMNIS VDMEARAAPF 120 GAHVPGHHHQ GEVTKRPCNN IFSRMLQISP GKLGGDVAGC DSVAVLGSPR GGGGGGGIKA 180 GPGGVMVGSD MINANSSKGC LLENTGVGVQ ISSPRNPGIK RRKSQAKKVV CIPAPAAANS 240 RPTGEVVPSD LWAWRKYGQK PIKGSPYPRG YYRCSSSKGC SARKQVERSR TDPNMLVITY 300 TSEHNHPWPT QRNALAGSTR SQPSKAGAGS KTSPNTAHHQ KPDSPAKEEQ KAAADSMNEN 360 NHVLSPVNAT VGSSSTVKEE FEDIEKLQLE LDHHDPHHQH DSDHHQFSNH DQVFPYRPSM 420 PEQSNNQSED FFADLGEIEA DPLNLLFSQC FTADEQQKGG NKAALDPFNL FDWSGDQNTN 480 TPNNNPSFGH EAKRHL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30650.1 | 1e-87 | WRKY family protein |