PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr5g0016461 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 198aa MW: 23451.5 Da PI: 9.8653 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 51.5 | 1.3e-16 | 33 | 75 | 2 | 44 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 i+n+ r+vtf kR++g++KK +EL LCd++ +vii+ +++ RcHm_v2.0_Chr5g0016461 33 LIKNEKSRNVTFRKRKKGLMKKTYELNKLCDVQCSVIIYENKN 75 59************************************97754 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence |
MLVLVRSLMH FTYFLCMFSQ IMGRSNTKLP LELIKNEKSR NVTFRKRKKG LMKKTYELNK 60 LCDVQCSVII YENKNGQLVR PDTYPENPEE VKQIIDRFVS KSAKVRKVEN LADFFGKQIM 120 QVKKETAKLH QRNNEARFPS WHDMLDDFSL DQLLALLKKL EHKIEDVHKH YDKQCVIDDS 180 ILRQTVCAFL FSSFNLFI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 45 | 49 | RKRKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22590.2 | 1e-12 | M-type_MADS family protein |