PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0015931
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family HD-ZIP
Protein Properties Length: 845aa    MW: 92528.4 Da    PI: 6.4655
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0015931genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox581.6e-181775357
                            --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                            k  ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  RcHm_v2.0_Chr5g0015931 17 KYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 75
                            6789*****************************************************97 PP
2START171.45.9e-541663732204
                             HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT CS
                   START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg 88 
                             +aee+++e+++ka+ ++  Wv++  +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++  ++l  i  g
  RcHm_v2.0_Chr5g0015931 166 IAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNSSGVAARACGLVSLEPT-KVAEILKDRPSWFRDCRCLDVLSIIPAG 251
                             68999*****************************************************.8888888888****************99 PP

                             ..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE- CS
                   START  89 ..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwveh 169
                               g+++l +++++a+++l++ Rdf+++Ry+ +l++g++v++++S++s +  p+   s+s+vRae+lpSg+li+p+++g+s +++v+h
  RcHm_v2.0_Chr5g0015931 252 ngGTIELLYMQTYAPTTLAAaRDFWTLRYTTTLEDGSLVVCERSLTSSTGGPTgppSPSFVRAEMLPSGFLIRPCEGGGSIIHIVDH 338
                             99**********************************************99999999******************************* PP

                             EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS
                   START 170 vdlkgrlphwllrslvksglaegaktwvatlqrqc 204
                             vdl++++++++lrsl++s+ + ++k++va+l++ +
  RcHm_v2.0_Chr5g0015931 339 VDLDAWSVPEVLRSLYESSKIIAQKMTVAALRHIR 373
                             *******************************9865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 845 aa     Download sequence    
MALVMHKEKH NQMDSSKYVR YTPEQVEALE RVYSECPKPS SLRRQQLIRE CPILSNIEPK  60
QIKVWFQNRR CREKQRKESS RLTTVNRKLS AMNKLLMEEN DRLQKQVSHL VYENGFMKQQ  120
LHTASGTTTD NSCESVVMNG QHQQQHNPTP QHPQRDANNP AGLLAIAEET LAEFLSKATG  180
TAVDWVQMIG MKPGPDSIGI VAVSRNSSGV AARACGLVSL EPTKVAEILK DRPSWFRDCR  240
CLDVLSIIPA GNGGTIELLY MQTYAPTTLA AARDFWTLRY TTTLEDGSLV VCERSLTSST  300
GGPTGPPSPS FVRAEMLPSG FLIRPCEGGG SIIHIVDHVD LDAWSVPEVL RSLYESSKII  360
AQKMTVAALR HIRQIAQEAT GEIQYAGGRQ PAVLRTFSQR LCRGFNDAVN GFADDGWSLL  420
GSDGAEDVTI AINSSPNKFL GSQYNASIFP SFGGGVLCAK ASMLLQSVPP ALLVRFLREH  480
RSEWADYGVD AYSAACLKAS PYAVPCARPG GFPSSQVILP LAPTVENEEF LEVVRLEGHA  540
YSPEDVALAR DMFLLQLCSG VDENAVGACA QLVFAPIDES FADDAPLLPS GFHVIPLDAK  600
TDGPTANRTL DLASTLEVGA SSARRVNEGD ANSYNLRSVL TIAFQFTFEN HLRDSVAAMA  660
RQYVRGVVSS VQRVAMAIAP SRLSSQMGPK SLPGSPEAHT LARWIFRSYR IHTGAELFRL  720
DSPSGDAVLK QLWSHPDAIM CCSVKTNASP VFTFANQAGL DMLETTLVAL QDIMLDKILD  780
EAGRKVLCSE FSKIMHQGFA YLPAGICASS MGRPVSYEQA IAWKVVDDDD SNHCLALMFT  840
NWSFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein