PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0014961
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ARF
Protein Properties Length: 892aa    MW: 98764.1 Da    PI: 6.4784
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0014961genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.27.5e-24127228199
                             EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                             f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v
  RcHm_v2.0_Chr5g0014961 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSV 211
                             99*****************************8544444..48********************************************* PP

                             EEEE-SSSEE..EEEEE-S CS
                      B3  81 vFkldgrsefelvvkvfrk 99 
                             +F   ++++ +l+++++r+
  RcHm_v2.0_Chr5g0014961 212 LFI--WNEKNQLLLGIRRA 228
                             ***..8899999****997 PP
2Auxin_resp115.93.4e-38253336183
              Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                             aahaast+s F+++YnPras+seFv++++k+ ka++ + +svGmRf+m fete+ss rr++Gt++g+sdld  rWpnS+Wrs+k
  RcHm_v2.0_Chr5g0014961 253 AAHAASTNSRFTIFYNPRASPSEFVIPLAKYIKAVYhTCISVGMRFRMLFETEESSVRRYMGTITGISDLDAARWPNSHWRSVK 336
                             79*********************************956689****************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 892 aa     Download sequence    
MRLSSAGFSP QPQEGEKRVL NSELWHACAG PLVCLPAVGS RVVYFPQGHS EQVAASTNKE  60
VDAHIPNYPS LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLNPQEQKDG YLPAGLGSPN  120
KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHDNEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRANR PQTVMPSSVL  240
SSDSMHLGLL AAAAHAASTN SRFTIFYNPR ASPSEFVIPL AKYIKAVYHT CISVGMRFRM  300
LFETEESSVR RYMGTITGIS DLDAARWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT  360
TFPMYPSPFP LRLKRPWPPG LPSFTGMRED DLSMNTPLMW LRGDTGDRGI QSLNYHGIGV  420
TPWMQPRLDV SMIGLQTDMY QAMAAAALQE MRAVDPSKSL HTSLLQFQQT QNLPSRSAAL  480
MQPQMVQESQ PQPAFLQGVQ ENHRQSHSQT PTQSHLQHQL QHQNSFSNQQ QQLLDHQQIP  540
SAVSSMNHFA SASQSQSPSL QVITSLCQQQ SFSDSNGNPA TSTILSPLQS LMGSFSQDES  600
SNLLNMPRTN SLISSSGWPS KRAAIEPLLS SGVSQCVLPQ VEQLGPPHTT ISQNPISLPP  660
FPGRECSIDQ EGSTDPQTHL LFGINIESSP LLMQNGMSNL RGVGSDSDST TIHFPSNYMS  720
PTGTDFSLNP AVTPSSCIDE SGFLQSSENV GHENPPNGNF VKVYKSGSFG RSLDITKFSS  780
YHELRSELAR MFGLEGELED PVRSGWQLVF VDRENDVLLL GDDPWPEFVN SVWCIKILSP  840
QEVQQMGKRG LELLKSVPMQ RLSGNSCDEY GGSRQDSRNL SSGITSVGSL EY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0ARF family protein