PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr5g0014491 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | TCP | ||||||||
Protein Properties | Length: 441aa MW: 47923.6 Da PI: 8.6698 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 118.9 | 6.2e-37 | 68 | 229 | 2 | 136 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........ssssaseceaes 77 g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWL+++a ai el+++ s ++++ RcHm_v2.0_Chr5g0014491 68 SGGKDRHSKVWTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKAAADAIAELPSLnssfpdtpkqlS-------DEKR 147 689*************************************************************543322222220.......2222 PP TCP 78 ssssasnsssg.............................kaaksaakskksqksaasalnlakesrakarararertrekmriknk 135 ss+ + +a++s+ +++k + + ++ ++ r kar+rarer ++++ ++++ RcHm_v2.0_Chr5g0014491 148 ASSE------RgfdsveldvdgdpnyhhqvqnhhqlcmskSACSSTSETSKGSGGLSLSRSEMRVNRDKARERARERAAKEKEKDSN 228 2222......123334466666666666677788888876666666666666666666777777888*********77777666655 PP TCP 136 l 136 + RcHm_v2.0_Chr5g0014491 229 N 229 4 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 441 aa Download sequence |
MEVEEIQAQQ PRKFPRIGNG GRGSTIVKSP DEEEDGGREL KRAGGGDAGT NRLNGWHHSR 60 IIRVSRASGG KDRHSKVWTS KGLRDRRVRL SVTTAIQFYD LQDRLGYDQP SKAVEWLIKA 120 AADAIAELPS LNSSFPDTPK QLSDEKRASS ERGFDSVELD VDGDPNYHHQ VQNHHQLCMS 180 KSACSSTSET SKGSGGLSLS RSEMRVNRDK ARERARERAA KEKEKDSNND ESSRIAQAIS 240 QNASFTELLT GGIGNNRNNS PTGHQQNNPN GEPILFHKAA PPMDYFGSSL LGLSSTPTRN 300 HHQFSGQIHL GNSLPQTMFS ISGDHNHSHP EMQHFSFVPD YIPVSAAANG GEYNLNFSMS 360 SSGGLAGFNR GTLQSNSSSS PSLLPHLQRF SPMDGSSSVP FFIGAAAAAA APTMENHQFP 420 AGLQLYGDGS RHSDHKGKAK N |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18390.1 | 3e-43 | TCP family protein |