PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0014491
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family TCP
Protein Properties Length: 441aa    MW: 47923.6 Da    PI: 8.6698
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0014491genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP118.96.2e-37682292136
                     TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........ssssaseceaes 77 
                              g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWL+++a  ai el+++           s       ++++
  RcHm_v2.0_Chr5g0014491  68 SGGKDRHSKVWTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKAAADAIAELPSLnssfpdtpkqlS-------DEKR 147
                             689*************************************************************543322222220.......2222 PP

                     TCP  78 ssssasnsssg.............................kaaksaakskksqksaasalnlakesrakarararertrekmriknk 135
                              ss+      +                             +a++s+ +++k +   +  ++ ++  r kar+rarer ++++ ++++
  RcHm_v2.0_Chr5g0014491 148 ASSE------RgfdsveldvdgdpnyhhqvqnhhqlcmskSACSSTSETSKGSGGLSLSRSEMRVNRDKARERARERAAKEKEKDSN 228
                             2222......123334466666666666677788888876666666666666666666777777888*********77777666655 PP

                     TCP 136 l 136
                             +
  RcHm_v2.0_Chr5g0014491 229 N 229
                             4 PP
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    
MEVEEIQAQQ PRKFPRIGNG GRGSTIVKSP DEEEDGGREL KRAGGGDAGT NRLNGWHHSR  60
IIRVSRASGG KDRHSKVWTS KGLRDRRVRL SVTTAIQFYD LQDRLGYDQP SKAVEWLIKA  120
AADAIAELPS LNSSFPDTPK QLSDEKRASS ERGFDSVELD VDGDPNYHHQ VQNHHQLCMS  180
KSACSSTSET SKGSGGLSLS RSEMRVNRDK ARERARERAA KEKEKDSNND ESSRIAQAIS  240
QNASFTELLT GGIGNNRNNS PTGHQQNNPN GEPILFHKAA PPMDYFGSSL LGLSSTPTRN  300
HHQFSGQIHL GNSLPQTMFS ISGDHNHSHP EMQHFSFVPD YIPVSAAANG GEYNLNFSMS  360
SSGGLAGFNR GTLQSNSSSS PSLLPHLQRF SPMDGSSSVP FFIGAAAAAA APTMENHQFP  420
AGLQLYGDGS RHSDHKGKAK N
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.13e-43TCP family protein