PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr5g0013531 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 183aa MW: 20307.2 Da PI: 10.3676 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 69.5 | 3e-22 | 11 | 55 | 3 | 47 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 + ++s rqvtfskRr+g++KKA+E+ +LC+aeva+++fs+ gk + RcHm_v2.0_Chr5g0013531 11 VMDSSSRQVTFSKRRTGLFKKAHEIATLCGAEVAIVVFSPGGKPF 55 66899***********************************99855 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence |
MGRRKIEMKK VMDSSSRQVT FSKRRTGLFK KAHEIATLCG AEVAIVVFSP GGKPFSFGNP 60 NVDSVADRFL NQEEEDNTDD RGVRRSGKVV ERLNQQLADV VKNLEAEKKR GEVIAKALVK 120 AETKWGLTIQ ERSHGELVKV KQSLEELHES VKARESDMEA SSSLLLLANK PAKETKKTVA 180 KSG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 4e-48 | M-type_MADS family protein |