PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0012431
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MIKC_MADS
Protein Properties Length: 248aa    MW: 28529.2 Da    PI: 9.7603
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0012431genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.51.3e-312777151
                            S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                  SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                            krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyeys+
  RcHm_v2.0_Chr5g0012431 27 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSNRGRLYEYSN 77
                            79***********************************************95 PP

2K-box102.94.2e-3495190499
                   K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqee 90 
                             s++ s++ea+++++qqe+akL+++i +Lq+++R ++ e+L+++s+keL+ +e++Lek++++iRskKnell+++ie++qk+e +l+++
  RcHm_v2.0_Chr5g0012431  95 SNNGSVSEATTQYYQQEAAKLRAQITTLQNSNRGYMAEGLSNMSIKELKGVETKLEKAISRIRSKKNELLFAEIEYMQKRELDLHNN 181
                             444459********************************************************************************* PP

                   K-box  91 nkaLrkkle 99 
                             n+ Lr+k++
  RcHm_v2.0_Chr5g0012431 182 NQLLRAKIA 190
                             *******97 PP

Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    
MAYENKPNTV LDADAQRRLG RGKIEIKRIE NTTNRQVTFC KRRNGLLKKA YELSVLCDAE  60
VALIVFSNRG RLYEYSNNSV RETIERYKKA CADSSNNGSV SEATTQYYQQ EAAKLRAQIT  120
TLQNSNRGYM AEGLSNMSIK ELKGVETKLE KAISRIRSKK NELLFAEIEY MQKRELDLHN  180
NNQLLRAKIA DNERHQQSIN AIAGGHGSYE IMQPTQPFHE ARNYFQVNAL QPNIHQYSRH  240
DQISLQLV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-119MIKC_MADS family protein