PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr5g0012431 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 248aa MW: 28529.2 Da PI: 9.7603 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 99.5 | 1.3e-31 | 27 | 77 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyeys+ RcHm_v2.0_Chr5g0012431 27 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSNRGRLYEYSN 77 79***********************************************95 PP | |||||||
2 | K-box | 102.9 | 4.2e-34 | 95 | 190 | 4 | 99 |
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqee 90 s++ s++ea+++++qqe+akL+++i +Lq+++R ++ e+L+++s+keL+ +e++Lek++++iRskKnell+++ie++qk+e +l+++ RcHm_v2.0_Chr5g0012431 95 SNNGSVSEATTQYYQQEAAKLRAQITTLQNSNRGYMAEGLSNMSIKELKGVETKLEKAISRIRSKKNELLFAEIEYMQKRELDLHNN 181 444459********************************************************************************* PP K-box 91 nkaLrkkle 99 n+ Lr+k++ RcHm_v2.0_Chr5g0012431 182 NQLLRAKIA 190 *******97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence |
MAYENKPNTV LDADAQRRLG RGKIEIKRIE NTTNRQVTFC KRRNGLLKKA YELSVLCDAE 60 VALIVFSNRG RLYEYSNNSV RETIERYKKA CADSSNNGSV SEATTQYYQQ EAAKLRAQIT 120 TLQNSNRGYM AEGLSNMSIK ELKGVETKLE KAISRIRSKK NELLFAEIEY MQKRELDLHN 180 NNQLLRAKIA DNERHQQSIN AIAGGHGSYE IMQPTQPFHE ARNYFQVNAL QPNIHQYSRH 240 DQISLQLV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18960.1 | 1e-119 | MIKC_MADS family protein |