PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0011581
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WRKY
Protein Properties Length: 277aa    MW: 30212.3 Da    PI: 5.2199
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0011581genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY962.5e-3084142259
                             --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                    WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                             +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp++++itY++eHnh+
  RcHm_v2.0_Chr5g0011581  84 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRVDPTTLVITYSSEHNHP 142
                             69*************************998****************************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    
MGSPTFFNKH FMSDIDHDDY NNNTSSTPEN SSGSPPPPPP PAFNDVVYSK IASSPKKSSR  60
RAVQKRVVSV PIKENSNTNT PPPSDSWAWR KYGQKPIKGS PYPRGYYRCS SSKGCPARKQ  120
VERSRVDPTT LVITYSSEHN HPWPASRSHH GTKPGIKAET REEETAAGQP EPDPEERRFA  180
ADLGGDEESS LVIIPSVVDE FGWFADMETT SSRVLESPIF AESGGGADTD DVAGMVFPMG  240
EEDESLFADL GELPECSLVF RHRRVGGGGV GPQAQIC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.14e-79WRKY family protein