PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr5g0010031 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | TCP | ||||||||
Protein Properties | Length: 246aa MW: 28087.8 Da PI: 4.8435 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 112 | 8.1e-35 | 94 | 177 | 3 | 97 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgk 89 ++kdrhski+T++g+RdRR Rlsa++a++f+d+qd+LGfd++sk+i+WL+ +ak+ai +l ++s++++ + ++ g+ RcHm_v2.0_Chr5g0010031 94 ARKDRHSKIYTSKGPRDRRFRLSAQTAIEFYDVQDRLGFDRPSKAIDWLIHKAKAAIEALEDSSTTHQPQH---HQ--------GGN 169 69*************************************************************77766222...11........111 PP TCP 90 aaksaaks 97 a++++ k+ RcHm_v2.0_Chr5g0010031 170 AEPETVKT 177 11111111 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence |
MFVKLERKKR ETSMTSHSQE SLYLQMSQQR ESKQEEEEEE EEEEENEAQD QPEVAQAQQD 60 YGASRVESKQ PSMNNERYGR IVKVQGGHVI RSIARKDRHS KIYTSKGPRD RRFRLSAQTA 120 IEFYDVQDRL GFDRPSKAID WLIHKAKAAI EALEDSSTTH QPQHHQGGNA EPETVKTHQP 180 LDEGTMKNES KEPVLDYAEE ALNCAPNLSE ANFMEMGWFQ SLMAWNYNAG DGGEGCSFNS 240 SSVTLL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31070.1 | 3e-39 | TCP family protein |