PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr5g0009221

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

HB-other

Protein Properties

Length: 1733aa MW: 194675 Da PI: 4.9821

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr5g0009221	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.4	2.4e-18	29	84	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ qle+Le++++ + yps++ r+eL++klgL++rq ++WF+ rR k+kk RcHm_v2.0_Chr5g0009221 29 PKRQMKTPFQLETLEKAYALETYPSESIRAELSEKLGLSDRQLQMWFCHRRLKDKK 84 69****************************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 1733 aa Download sequence
MEGSEGDNQN RNPENSNSKL NNSGEGGKPK RQMKTPFQLE TLEKAYALET YPSESIRAEL 60 SEKLGLSDRQ LQMWFCHRRL KDKKEGGSGS GPGPGPGPAK KQRKSVAVLP EPPIDDLAHG 120 SEPGSDYGSG SGSGSSPFGH ADRNVVSRSV VVEDMPRRRH YESQQSITEL RAIAIVEAQL 180 GEPLREDGPV LGIEFDQLPP DAFGAPLVAE QQKRHDAKLN KGTPRSLHEY PYLQDHPIIR 240 PDVYGQVAQS HFHDSAIDGP TARASPFASG NEQLSRVHGG HSRARLLSQQ EKQAVAFSSP 300 GDDGLPLRDP FINVRMNTQY GEPPIIAPEN SNVLSDGQIN DTMLRMERKR KSEEVRMAKE 360 VEAHEVRIRK ELEKQDILRR KNEERMKKEM ERQDRERRKE EERLMRERQR EEERSKKEQK 420 REIERREKFL QKEHIRAEKR RQKEELRKER EEVRRKAALE KATARRLLNK SMELYEDEQL 480 ELMELAAASK GLSSIISIDP DTNLDEFRDD LTAFPPKSVL LKKPFAVHPW IDSEENIGNF 540 LMVWRFLITF ADVLELWPFT VDEFVQAFHD YDSRLLGEIH VALLRLIIKD IEDVARTPST 600 GLGLNQNGAA NPGGGHPQIV EGAYAWGFDI RNWQKHLNLL TWPEIFRQLA LSAGFGPQLK 660 KRSISWSYLP DNDEGKGCRD VISTLRNGSA AENAFAIMQE KGLLAPRRSR HRLTPGTVKF 720 AAFHVLSLEG NKGLTVLELA DKIQKSGLRD LTTSKTPEAS ISVALTRDTK LFERIAPSTY 780 RVRSAYRKDP IDAEAILSAA RKKVQIFENG ILAAEDVDEV ERDDAEEVER DEDSDCDDVD 840 EDPEVDDLAT PAIVKKSPDQ FNEVTPFSEN GQENLCIDVA PTVQNEFDKD VSSFPVTASK 900 EADGPSASSK QCVSGVEIST SNLDQENMEI DESKAGESWV QGLTEGDYSD LSVEERLSSL 960 VSLIGIANEG NSIRVVLEDR LEAANALKKQ MWAEAQLDKS RLKEENVSKV DIPSFMGGKA 1020 EAHVPGVEDG QSPLLDVYNR INEEGAAETQ NSNHGSQVLL NGVPVERAMV PQDTSMGPEN 1080 ILNQQLAYAS KKSRSQLKSY IAHRAEEMYA YRSLPLGQDR RHNRYWQFVA SASSNDPGSG 1140 RIFIELNNGN WRLIDTEEAF DTLLMSLDTR GIRESHLRLM LQKIEASFKE NVRRNLHPSS 1200 RNHVKKEADE MDSSPDYPSG FDSPGSTVSA LNTDVGETSS SFRIELNRNE NEKRAALSRY 1260 QDFQKWMWRE CFSTSALCAS KYGKKRCRQL FDFCDFCLSC YHFEDSHCSF CHQTFGATYE 1320 NLDFSEHVIQ CKERRNLETC DIHVPGTSVP LASKLLKAFM ALVEVSVPPE ALQSFWTEDS 1380 RKTWGAKLNA SSSVEELLQM LTVFETAMKR DFVSSNFAAT DELLGSSKQS VIANRDYLDT 1440 KSVSVLPWIP HTTAAVALRV YEMDSAITYI PNEKPEPNGD KEVGEHIKIP LRFTPMRNDR 1500 EIEPTETDHN EQSTHLKSAR NSLKRGRGGR EQGRGKKSKS GGSRRKARGN ENENMSQGLG 1560 PVGRRTQGQG SGRGRRTVRK RRMKNRAVEG TLMGHVTDLR SSPDSGGESP RNLAGEWDDE 1620 NINMIHMKGD EQREEYEQAE ALESDDEEQA VGYEQGNWEI GFDGTSSGWN SGLREPSDEE 1680 MDASEDDNNG IEEAREEDSE GDVDLSDASD EVPNRIINDG GTDSASDDDD YSD

Sequence ? help Back to Top

Protein Sequence Length: 1733 aa Download sequence

MEGSEGDNQN RNPENSNSKL NNSGEGGKPK RQMKTPFQLE TLEKAYALET YPSESIRAEL  60
SEKLGLSDRQ LQMWFCHRRL KDKKEGGSGS GPGPGPGPAK KQRKSVAVLP EPPIDDLAHG  120
SEPGSDYGSG SGSGSSPFGH ADRNVVSRSV VVEDMPRRRH YESQQSITEL RAIAIVEAQL  180
GEPLREDGPV LGIEFDQLPP DAFGAPLVAE QQKRHDAKLN KGTPRSLHEY PYLQDHPIIR  240
PDVYGQVAQS HFHDSAIDGP TARASPFASG NEQLSRVHGG HSRARLLSQQ EKQAVAFSSP  300
GDDGLPLRDP FINVRMNTQY GEPPIIAPEN SNVLSDGQIN DTMLRMERKR KSEEVRMAKE  360
VEAHEVRIRK ELEKQDILRR KNEERMKKEM ERQDRERRKE EERLMRERQR EEERSKKEQK  420
REIERREKFL QKEHIRAEKR RQKEELRKER EEVRRKAALE KATARRLLNK SMELYEDEQL  480
ELMELAAASK GLSSIISIDP DTNLDEFRDD LTAFPPKSVL LKKPFAVHPW IDSEENIGNF  540
LMVWRFLITF ADVLELWPFT VDEFVQAFHD YDSRLLGEIH VALLRLIIKD IEDVARTPST  600
GLGLNQNGAA NPGGGHPQIV EGAYAWGFDI RNWQKHLNLL TWPEIFRQLA LSAGFGPQLK  660
KRSISWSYLP DNDEGKGCRD VISTLRNGSA AENAFAIMQE KGLLAPRRSR HRLTPGTVKF  720
AAFHVLSLEG NKGLTVLELA DKIQKSGLRD LTTSKTPEAS ISVALTRDTK LFERIAPSTY  780
RVRSAYRKDP IDAEAILSAA RKKVQIFENG ILAAEDVDEV ERDDAEEVER DEDSDCDDVD  840
EDPEVDDLAT PAIVKKSPDQ FNEVTPFSEN GQENLCIDVA PTVQNEFDKD VSSFPVTASK  900
EADGPSASSK QCVSGVEIST SNLDQENMEI DESKAGESWV QGLTEGDYSD LSVEERLSSL  960
VSLIGIANEG NSIRVVLEDR LEAANALKKQ MWAEAQLDKS RLKEENVSKV DIPSFMGGKA  1020
EAHVPGVEDG QSPLLDVYNR INEEGAAETQ NSNHGSQVLL NGVPVERAMV PQDTSMGPEN  1080
ILNQQLAYAS KKSRSQLKSY IAHRAEEMYA YRSLPLGQDR RHNRYWQFVA SASSNDPGSG  1140
RIFIELNNGN WRLIDTEEAF DTLLMSLDTR GIRESHLRLM LQKIEASFKE NVRRNLHPSS  1200
RNHVKKEADE MDSSPDYPSG FDSPGSTVSA LNTDVGETSS SFRIELNRNE NEKRAALSRY  1260
QDFQKWMWRE CFSTSALCAS KYGKKRCRQL FDFCDFCLSC YHFEDSHCSF CHQTFGATYE  1320
NLDFSEHVIQ CKERRNLETC DIHVPGTSVP LASKLLKAFM ALVEVSVPPE ALQSFWTEDS  1380
RKTWGAKLNA SSSVEELLQM LTVFETAMKR DFVSSNFAAT DELLGSSKQS VIANRDYLDT  1440
KSVSVLPWIP HTTAAVALRV YEMDSAITYI PNEKPEPNGD KEVGEHIKIP LRFTPMRNDR  1500
EIEPTETDHN EQSTHLKSAR NSLKRGRGGR EQGRGKKSKS GGSRRKARGN ENENMSQGLG  1560
PVGRRTQGQG SGRGRRTVRK RRMKNRAVEG TLMGHVTDLR SSPDSGGESP RNLAGEWDDE  1620
NINMIHMKGD EQREEYEQAE ALESDDEEQA VGYEQGNWEI GFDGTSSGWN SGLREPSDEE  1680
MDASEDDNNG IEEAREEDSE GDVDLSDASD EVPNRIINDG GTDSASDDDD YSD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	78	85	RRLKDKKE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	0.0	HB-other family protein