PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr5g0008871 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | SBP | ||||||||
Protein Properties | Length: 156aa MW: 17702.3 Da PI: 7.8442 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 136.8 | 6.7e-43 | 76 | 152 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 Cq+++C+adls+ak+y+rrhkvC++hskap+v+v gl+qrfCqqCsrfh+lsefDe+krsCrrrLa+hnerrrk++a RcHm_v2.0_Chr5g0008871 76 CQAQSCNADLSDAKQYYRRHKVCDFHSKAPAVIVGGLQQRFCQQCSRFHNLSEFDENKRSCRRRLAGHNERRRKSSA 152 **************************************************************************976 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 156 aa Download sequence |
MEPNKAQGKR SLNFKTEEEE EEEEEDEDEE HASTVLLHGE DDRRKRVMVM NSTTSSASPS 60 KKGSGAGGST TTRPSCQAQS CNADLSDAKQ YYRRHKVCDF HSKAPAVIVG GLQQRFCQQC 120 SRFHNLSEFD ENKRSCRRRL AGHNERRRKS SADYSN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33810.1 | 1e-41 | SBP family protein |