PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr5g0008251 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | HSF | ||||||||
Protein Properties | Length: 128aa MW: 14706.4 Da PI: 4.8619 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 68.9 | 1.1e-21 | 26 | 92 | 2 | 60 |
HHHHHHHHHCTG........GGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS HSF_DNA-bind 2 Flkklyeilede........elkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60 Fl+k+y++le+e ++++sw+ +gn f+v+ + ef++ +LpkyFkh+nf+SF+RQLn+Y RcHm_v2.0_Chr5g0008251 26 FLSKTYDLLEEEeeedkdgsWKRSIVSWNGEGNGFIVWSPAEFSELLLPKYFKHNNFSSFIRQLNTY 92 9*********665556666567899****************************************** PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 128 aa Download sequence |
MCMDQHISEV NHGTSQSSRT RSPAPFLSKT YDLLEEEEEE DKDGSWKRSI VSWNGEGNGF 60 IVWSPAEFSE LLLPKYFKHN NFSSFIRQLN TYVSSLNSSL ASSIFIYIQN EISYRSINGL 120 YITTISMM |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36990.1 | 2e-24 | HSF family protein |