PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr5g0006571

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

Protein Properties

Length: 899aa MW: 98478.2 Da PI: 7.9035

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr5g0006571	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	59	8.6e-19	340	440	1	99
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFk 83 f+k l+ sd+++ grlvlpkk+ae++ ++++e+ l+++d++g++W +++++ +++s++yvl+ G ++ +L++gD+v+F+ RcHm_v2.0_Chr5g0006571 340 FEKMLSASDAGRIGRLVLPKKCAEAYfpPISQPEGLPLKVQDSKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDIVTFS 425 89************************555566778***********99899999999.******************* PP E-SSSEE..EEEEE-S CS B3 84 ldgrsefelvvkvfrk 99 + + +++lv++ +r+ RcHm_v2.0_Chr5g0006571 426 RLE-PGGKLVMGCRRA 440 665.777777777775 PP

Sequence ? help Back to Top
Protein Sequence Length: 899 aa Download sequence
MSPSSSSSSS KCCYNSECGE LKPEHPRKAW RLRTGDFAEL CDRCALIYEE GRFCETFHVK 60 ASGWRCCESC GKRVHCGCIV SAQAFTLLDP GGIECVTCAR KHIVLTSNPA WAPTLFFHSP 120 LSDRLKDMSG KNWTQLAGSG PVPWRQAPSL FNSSISSSEL HGRLPYDVDG SMGINKLNAG 180 ERVSVHPLEK KKAEDFSERL MKVNLAIGTP VSFENGNSGN KCMEQSSSCL NISQQPASLK 240 EEPSTPQFVL SVPYVSASET NGQVVVTGTN LRPALPMVKQ FNGTLHNGVE LSGDTQIRNA 300 RPRADARGRS PLLPRYWPRF TDQELQQMSG DSNSVITPLF EKMLSASDAG RIGRLVLPKK 360 CAEAYFPPIS QPEGLPLKVQ DSKGKEWVFQ FRFWPNNNSR MYVLEGVTPC IQSMQLQAGD 420 IVTFSRLEPG GKLVMGCRRA STAPSDQEND TNKMGNGVSA HVDVSITDTK SGEVFSNAEL 480 ADPSTFPKGD KSSYISREVE GAKSLISRKR KNSNLGSKSK RLRIEKEDLI ELKITWEEAQ 540 GLLRPPPNHV PTVVVIEGFE FEEYEDGPIL GKPTLYATGS KGEKIQWAQC EVCCKWRKLP 600 VNALLPSKWT CSDNSWDPDR SLCSAAQELT TEQLEDLLPR CNSVAPKKIK AAKQDPDNIE 660 ALEGLDTLAN LAILGEGESL PASAQATTKH PRHRPGCSCI VCIQPPSGKG PKHKQTCICN 720 VCSTVKRRFR TLMMRREKNK SEKEAETTRK KQQQQQLLDD ETLLCGNAGS SSPNNKVEVL 780 ELSDDDFNRT KSPTPPYKGQ IDLNIQPERE EDLSPGSDSG GVIKLLQDAT ERYLRQQRQS 840 LSTSGGGERS MGNKSQRAGG EAGGEPLGNI AILGNSNHDS GNDHPATLSV KASASMTAT

Sequence ? help Back to Top

Protein Sequence Length: 899 aa Download sequence

MSPSSSSSSS KCCYNSECGE LKPEHPRKAW RLRTGDFAEL CDRCALIYEE GRFCETFHVK  60
ASGWRCCESC GKRVHCGCIV SAQAFTLLDP GGIECVTCAR KHIVLTSNPA WAPTLFFHSP  120
LSDRLKDMSG KNWTQLAGSG PVPWRQAPSL FNSSISSSEL HGRLPYDVDG SMGINKLNAG  180
ERVSVHPLEK KKAEDFSERL MKVNLAIGTP VSFENGNSGN KCMEQSSSCL NISQQPASLK  240
EEPSTPQFVL SVPYVSASET NGQVVVTGTN LRPALPMVKQ FNGTLHNGVE LSGDTQIRNA  300
RPRADARGRS PLLPRYWPRF TDQELQQMSG DSNSVITPLF EKMLSASDAG RIGRLVLPKK  360
CAEAYFPPIS QPEGLPLKVQ DSKGKEWVFQ FRFWPNNNSR MYVLEGVTPC IQSMQLQAGD  420
IVTFSRLEPG GKLVMGCRRA STAPSDQEND TNKMGNGVSA HVDVSITDTK SGEVFSNAEL  480
ADPSTFPKGD KSSYISREVE GAKSLISRKR KNSNLGSKSK RLRIEKEDLI ELKITWEEAQ  540
GLLRPPPNHV PTVVVIEGFE FEEYEDGPIL GKPTLYATGS KGEKIQWAQC EVCCKWRKLP  600
VNALLPSKWT CSDNSWDPDR SLCSAAQELT TEQLEDLLPR CNSVAPKKIK AAKQDPDNIE  660
ALEGLDTLAN LAILGEGESL PASAQATTKH PRHRPGCSCI VCIQPPSGKG PKHKQTCICN  720
VCSTVKRRFR TLMMRREKNK SEKEAETTRK KQQQQQLLDD ETLLCGNAGS SSPNNKVEVL  780
ELSDDDFNRT KSPTPPYKGQ IDLNIQPERE EDLSPGSDSG GVIKLLQDAT ERYLRQQRQS  840
LSTSGGGERS MGNKSQRAGG EAGGEPLGNI AILGNSNHDS GNDHPATLSV KASASMTAT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30470.1	1e-171	B3 family protein