PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr5g0004541

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

GeBP

Protein Properties

Length: 412aa MW: 44977.3 Da PI: 7.177

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr5g0004541	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	108.4	5e-34	175	266	1	97
DUF573 1 klfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqk 87 klfqrlws+eDei++L+G+ ++k+k+g++p++d++af+ef+kks++++v+k ql +Kirr++kKf+++vkk + + +k+hd+k RcHm_v2.0_Chr5g0004541 175 KLFQRLWSDEDEIIILKGMNEYKTKKGVDPYADMTAFHEFIKKSLKVDVTKIQLQDKIRRMRKKFENNVKK-----KHKPTKAHDSK 256 579******************************************************************.....66789** PP DUF573 88 ifelskkiWg 97 +felskk+Wg RcHm_v2.0_Chr5g0004541 257 TFELSKKVWG 266 *******8 PP

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence
MAPKRPSPLD EPPAASSSEE EEEASSEEEG SGSGSEESES DAEATEPQKT TSTAQATPEK 60 KPQAKKPESA AAKPQSSSSG ETETESESES DGDTLAQRRV NVKPIASKPM EEVTPPPKAT 120 KPRSKPSASS PPATAKSGTK RPGGESELVK DSKKAKKKGD DPEEDGVEEE SKKSKLFQRL 180 WSDEDEIIIL KGMNEYKTKK GVDPYADMTA FHEFIKKSLK VDVTKIQLQD KIRRMRKKFE 240 NNVKKKHKPT KAHDSKTFEL SKKVWGGGEG GEDLTGQVTI ASFGKGEQPK SNGKAKGNQK 300 SNSKTLAALK AELLASPETT KEDEKSEALL KPCASNSVLS EVIGFHKGFK ELGLSETIVK 360 QGMELIGGSK RADLEDRWNK LHVAELELFV QRTELMRDQG KLILEAFKKS DH

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence

MAPKRPSPLD EPPAASSSEE EEEASSEEEG SGSGSEESES DAEATEPQKT TSTAQATPEK  60
KPQAKKPESA AAKPQSSSSG ETETESESES DGDTLAQRRV NVKPIASKPM EEVTPPPKAT  120
KPRSKPSASS PPATAKSGTK RPGGESELVK DSKKAKKKGD DPEEDGVEEE SKKSKLFQRL  180
WSDEDEIIIL KGMNEYKTKK GVDPYADMTA FHEFIKKSLK VDVTKIQLQD KIRRMRKKFE  240
NNVKKKHKPT KAHDSKTFEL SKKVWGGGEG GEDLTGQVTI ASFGKGEQPK SNGKAKGNQK  300
SNSKTLAALK AELLASPETT KEDEKSEALL KPCASNSVLS EVIGFHKGFK ELGLSETIVK  360
QGMELIGGSK RADLEDRWNK LHVAELELFV QRTELMRDQG KLILEAFKKS DH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61730.1	3e-25	GeBP family protein