PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr5g0004451 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 144aa MW: 15429.6 Da PI: 10.0744 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 32 | 1.6e-10 | 12 | 55 | 2 | 45 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 +i ++ r v f++Rr+g++KKA+ L + + +a+ ++s+tg+ RcHm_v2.0_Chr5g0004451 12 PITDYQSRMVAFTRRRTGLFKKAQKLEEMSGSSIAIAVISETGQ 55 7999**************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 144 aa Download sequence |
MGTGKKKIDI EPITDYQSRM VAFTRRRTGL FKKAQKLEEM SGSSIAIAVI SETGQPYLHG 60 SPSLLERVLA SKASSSASTT TADAGSSTTT ATTGSLERFK AGVNSQIEAC TTLEEAEIVK 120 RKLLEIKKRA DGKLSGSDLQ FVLN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 6e-14 | M-type_MADS family protein |