PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0003831
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family HD-ZIP
Protein Properties Length: 738aa    MW: 80763.2 Da    PI: 6.2129
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0003831genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox629.1e-2061116156
                             TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                             r++ +++t+ q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  RcHm_v2.0_Chr5g0003831  61 RKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 116
                             789999***********************************************998 PP

2START218.81.8e-682534771206
                             HHHHHHHHHHHHHHHHC-TT-EEEE........EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-T CS
                   START   1 elaeeaaqelvkkalaeepgWvkss........esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWde 74 
                             ela +a++el+++a+a++p+Wv           +++n+de+l++f+++ +      ++ea+r+s++v+m++++lve+l+d++ qW++
  RcHm_v2.0_Chr5g0003831 253 ELAVAAMEELIRMAQAGDPLWVPAHdnsssthhDILNEDEYLRTFPRGIGpkplgLKSEASRESALVIMNHVNLVEILMDVN-QWST 338
                             57899*****************88888899*****************999********************************.**** PP

                             T-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSE CS
                   START  75 tla....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpS 150
                              +     +a+tl+ +s+g      galq+m+ae+q++splvp R+ +fvRy++q+++g+w++vdvS+d+ ++ +    + R++++pS
  RcHm_v2.0_Chr5g0003831 339 VFCgivsRAMTLDILSTGvagnynGALQVMSAEFQVPSPLVPtRENYFVRYCKQHTDGTWAVVDVSLDNLRPSS----ISRSRRRPS 421
                             **99999****************************************************************965....8******** PP

                             EEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                   START 151 giliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                             g+li++++ng+skv+wvehv++++r +h+++r+lv+sgla+gak+wva+l+rqce+
  RcHm_v2.0_Chr5g0003831 422 GCLIQELPNGYSKVVWVEHVEVDDRAVHNIYRPLVNSGLAFGAKRWVAALDRQCER 477
                             ******************************************************97 PP

Sequence ? help Back to Top
Protein Sequence    Length: 738 aa     Download sequence    
MFQPSMFDSH HMSMLDMSTH KSSESDMGRS RDDDFETKSG TETTDVPSGD ELDPSQPRPK  60
RKRYHRHTQR QIQEMEAFFK ECPHPDDKQR KELSRELGLE PLQVKFWFQN KRTQMKAQHE  120
RHENSILKNE NDKLRAENNR YKEALSNATC PNCGGPAALG EMSFDEQHLR IENARLREEI  180
DRISSIAAKY VGKPMSSSFS HLSSSQGPSR SLDLAVGSFG ASQSGYVGEM YGSGDLLRSV  240
SVPTDADKPL IVELAVAAME ELIRMAQAGD PLWVPAHDNS SSTHHDILNE DEYLRTFPRG  300
IGPKPLGLKS EASRESALVI MNHVNLVEIL MDVNQWSTVF CGIVSRAMTL DILSTGVAGN  360
YNGALQVMSA EFQVPSPLVP TRENYFVRYC KQHTDGTWAV VDVSLDNLRP SSISRSRRRP  420
SGCLIQELPN GYSKVVWVEH VEVDDRAVHN IYRPLVNSGL AFGAKRWVAA LDRQCERLAS  480
SLANNIPAGD LCVITSAEGR KSMLKLAQRM VLSFCTGVGA STAHAWTTLS ATGSDDVRVM  540
TRKSMDDPGR PPGIVLSAAT SFWLPVPPKR VFDFLRDENS RSEWDILSNG GLVQEMAHIA  600
NGRDPGNCVS LLRVNSANSS QSNMLILQES CTDSTGSYVI YAPVDIVAMN VVLSGGDPDY  660
VALLPSGFAI LPDGPPAGGA GGILDVGSGG SLLTVAFQIL VDSVPTAKLS LGSVATVNNL  720
IKCTVERIRG AVTCDQNP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0HD-ZIP family protein