PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr5g0003831 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 738aa MW: 80763.2 Da PI: 6.2129 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62 | 9.1e-20 | 61 | 116 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r++ +++t+ q++e+e++F+++++p+ ++r+eL+++lgL+ qVk+WFqN+R+++k RcHm_v2.0_Chr5g0003831 61 RKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 116 789999***********************************************998 PP | |||||||
2 | START | 218.8 | 1.8e-68 | 253 | 477 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE........EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-T CS START 1 elaeeaaqelvkkalaeepgWvkss........esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWde 74 ela +a++el+++a+a++p+Wv +++n+de+l++f+++ + ++ea+r+s++v+m++++lve+l+d++ qW++ RcHm_v2.0_Chr5g0003831 253 ELAVAAMEELIRMAQAGDPLWVPAHdnsssthhDILNEDEYLRTFPRGIGpkplgLKSEASRESALVIMNHVNLVEILMDVN-QWST 338 57899*****************88888899*****************999********************************.**** PP T-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSE CS START 75 tla....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpS 150 + +a+tl+ +s+g galq+m+ae+q++splvp R+ +fvRy++q+++g+w++vdvS+d+ ++ + + R++++pS RcHm_v2.0_Chr5g0003831 339 VFCgivsRAMTLDILSTGvagnynGALQVMSAEFQVPSPLVPtRENYFVRYCKQHTDGTWAVVDVSLDNLRPSS----ISRSRRRPS 421 **99999****************************************************************965....8******** PP EEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 151 giliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 g+li++++ng+skv+wvehv++++r +h+++r+lv+sgla+gak+wva+l+rqce+ RcHm_v2.0_Chr5g0003831 422 GCLIQELPNGYSKVVWVEHVEVDDRAVHNIYRPLVNSGLAFGAKRWVAALDRQCER 477 ******************************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 738 aa Download sequence |
MFQPSMFDSH HMSMLDMSTH KSSESDMGRS RDDDFETKSG TETTDVPSGD ELDPSQPRPK 60 RKRYHRHTQR QIQEMEAFFK ECPHPDDKQR KELSRELGLE PLQVKFWFQN KRTQMKAQHE 120 RHENSILKNE NDKLRAENNR YKEALSNATC PNCGGPAALG EMSFDEQHLR IENARLREEI 180 DRISSIAAKY VGKPMSSSFS HLSSSQGPSR SLDLAVGSFG ASQSGYVGEM YGSGDLLRSV 240 SVPTDADKPL IVELAVAAME ELIRMAQAGD PLWVPAHDNS SSTHHDILNE DEYLRTFPRG 300 IGPKPLGLKS EASRESALVI MNHVNLVEIL MDVNQWSTVF CGIVSRAMTL DILSTGVAGN 360 YNGALQVMSA EFQVPSPLVP TRENYFVRYC KQHTDGTWAV VDVSLDNLRP SSISRSRRRP 420 SGCLIQELPN GYSKVVWVEH VEVDDRAVHN IYRPLVNSGL AFGAKRWVAA LDRQCERLAS 480 SLANNIPAGD LCVITSAEGR KSMLKLAQRM VLSFCTGVGA STAHAWTTLS ATGSDDVRVM 540 TRKSMDDPGR PPGIVLSAAT SFWLPVPPKR VFDFLRDENS RSEWDILSNG GLVQEMAHIA 600 NGRDPGNCVS LLRVNSANSS QSNMLILQES CTDSTGSYVI YAPVDIVAMN VVLSGGDPDY 660 VALLPSGFAI LPDGPPAGGA GGILDVGSGG SLLTVAFQIL VDSVPTAKLS LGSVATVNNL 720 IKCTVERIRG AVTCDQNP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G04890.1 | 0.0 | HD-ZIP family protein |