PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr5g0002561

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

WRKY

Protein Properties

Length: 583aa MW: 62969.5 Da PI: 7.2778

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr5g0002561	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.9	1.3e-30	314	372	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+ RcHm_v2.0_Chr5g0002561 314 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDRTILITTYEGNHNHP 372 7*********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 583 aa Download sequence
MDKGWGLTLD SDSLGFFLNK PPPSADPPPN KRTNPFGGGD RMFSGIEFPV KSRPADENRV 60 AVDEVDFFSD KNKNKNDDQE LKASNNTSVS VKKENWSGLD AVNTVLHLVT VNTGSDQSTV 120 DDGVSSDQAD NKRAKNHELA QLQFELQRMN AENQRLKEML GQVTDNYNAL QMHLVAVMQQ 180 QQQSQAAADQ TSQDHDQNIE GKSEEKRHEI GSSGSLVPRQ FLNLGPREET KADNEVSNSS 240 SEARTRSASP QNNVSTNGKR VGREESPESE TQGCVPNKVA KHNSPPKPID QATEATMRKA 300 RVSVRARSEA PMITDGCQWR KYGQKMAKGN PCPRAYYRCT MAVGCPVRKQ VQRCAEDRTI 360 LITTYEGNHN HPLPPAAMAM ASTTTAAASM LLSGSMSSAD GIMNPNNLLA RAILPCSSSV 420 ATISASAPFP TVTLDLTTSP PLQFQRPQQG QFQLPFPGQP QNFGPSASNP QLPQGFGQAL 480 YNQSKFSGLQ LSQELMNSTL AHQTQQQKQQ QPQQGQPSSF ADTVSAATAA ITADPTFTAA 540 LAAAITSIIG GSSHPNNNNN STTSNNSNGG NNNNNKINSF PGN

Sequence ? help Back to Top

Protein Sequence Length: 583 aa Download sequence

MDKGWGLTLD SDSLGFFLNK PPPSADPPPN KRTNPFGGGD RMFSGIEFPV KSRPADENRV  60
AVDEVDFFSD KNKNKNDDQE LKASNNTSVS VKKENWSGLD AVNTVLHLVT VNTGSDQSTV  120
DDGVSSDQAD NKRAKNHELA QLQFELQRMN AENQRLKEML GQVTDNYNAL QMHLVAVMQQ  180
QQQSQAAADQ TSQDHDQNIE GKSEEKRHEI GSSGSLVPRQ FLNLGPREET KADNEVSNSS  240
SEARTRSASP QNNVSTNGKR VGREESPESE TQGCVPNKVA KHNSPPKPID QATEATMRKA  300
RVSVRARSEA PMITDGCQWR KYGQKMAKGN PCPRAYYRCT MAVGCPVRKQ VQRCAEDRTI  360
LITTYEGNHN HPLPPAAMAM ASTTTAAASM LLSGSMSSAD GIMNPNNLLA RAILPCSSSV  420
ATISASAPFP TVTLDLTTSP PLQFQRPQQG QFQLPFPGQP QNFGPSASNP QLPQGFGQAL  480
YNQSKFSGLQ LSQELMNSTL AHQTQQQKQQ QPQQGQPSSF ADTVSAATAA ITADPTFTAA  540
LAAAITSIIG GSSHPNNNNN STTSNNSNGG NNNNNKINSF PGN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62300.1	1e-118	WRKY family protein