PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0000891
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 545aa    MW: 61278.4 Da    PI: 5.682
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0000891genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4125.3e-1261725412374
                    GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 
                             +++L++cA+a+s++d+ +a ++++ l +++s +g+pm+Rl ay++e+L+arl rs+s +yk+l+++  +   s+e ++++++++ ++
  RcHm_v2.0_Chr5g0000891 172 KDVLIRCAQAISEEDMYAAANCMEVLGHMVSVSGEPMERLGAYMLEGLRARLERSGSMIYKTLKCEVPT---SEELMTYMSILYRIC 255
                             789****************************************************************99...8999999999***** PP

                    GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelg 173
                             P+ kf++l  N  I ea+ +e rvHiiDf+i qG+QW++L+q La++p+gpp +RiTgv++ +s+  +   l+ +g+rL+++A++ +
  RcHm_v2.0_Chr5g0000891 256 PYWKFAYLSSNVVIREALLNEPRVHIIDFQIAQGTQWVPLIQHLACQPGGPPLIRITGVDDTQSNhaRGGGLHIVGKRLSEVAAKYN 342
                             *************************************************************9988889999**************** PP

                    GRAS 174 vpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflea 260
                             v+fefn+ +a +  ++ele+Lr++pgEa+aV + + lh+++desvs+e++rd++L+lvkslsPkv+++veqe+++n++sF  rf+e+
  RcHm_v2.0_Chr5g0000891 343 VRFEFNA-AAMSGCEVELENLRIQPGEAIAVTFPFVLHHMPDESVSTENHRDRLLRLVKSLSPKVMTLVEQESNTNTSSFYSRFVES 428
                             *******.89999************************************************************************** PP

                    GRAS 261 leyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksd 347
                             ++yy+a+f+s++a+ pr++ +ri+ E ++++r+ivn++ace aer+erhe l+kWr+rl++aGF+p p++ +   +++ +l+ ++++
  RcHm_v2.0_Chr5g0000891 429 VDYYTAMFESIDAGCPRDDTQRISAEMHCVARDIVNMIACEDAERVERHELLGKWRSRLMMAGFTPCPFGPSGIGEIRNMLKDYNEN 515
                             *************************************************************************************55 PP

                    GRAS 348 gyrveeesgslvlgWkdrpLvsvSaWr 374
                              yrve+ +g+l+lgWk+r+L + SaWr
  RcHm_v2.0_Chr5g0000891 516 -YRVEQIDGALYLGWKKRALATSSAWR 541
                             .*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    
MQTSQQHRST AIHMLHHQPM QEIDPYSSPH FQILENSVCP DTGSQGKNVS FQTNKEEYFT  60
LESTPVNDGF IACDSPSAVS DLSNRSPFSP QGSHSYSSDH HHFSDTTSGS PVSGCSGVDD  120
GNDLKYKLRE LEVSLLGPES DIVDSRYCCY KSDMPRWTEK QIAEMIPKLN LKDVLIRCAQ  180
AISEEDMYAA ANCMEVLGHM VSVSGEPMER LGAYMLEGLR ARLERSGSMI YKTLKCEVPT  240
SEELMTYMSI LYRICPYWKF AYLSSNVVIR EALLNEPRVH IIDFQIAQGT QWVPLIQHLA  300
CQPGGPPLIR ITGVDDTQSN HARGGGLHIV GKRLSEVAAK YNVRFEFNAA AMSGCEVELE  360
NLRIQPGEAI AVTFPFVLHH MPDESVSTEN HRDRLLRLVK SLSPKVMTLV EQESNTNTSS  420
FYSRFVESVD YYTAMFESID AGCPRDDTQR ISAEMHCVAR DIVNMIACED AERVERHELL  480
GKWRSRLMMA GFTPCPFGPS GIGEIRNMLK DYNENYRVEQ IDGALYLGWK KRALATSSAW  540
RCAAY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0GRAS family protein