PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr4g0445441 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 222aa MW: 25176 Da PI: 8.2125 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 77 | 1.4e-24 | 15 | 62 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 + en+sn+qvtfskRr+gi+KKA ELSvLC+a va+i+fs gk++ y RcHm_v2.0_Chr4g0445441 15 KLENSSNKQVTFSKRRAGIFKKAGELSVLCGAHVAIIVFSGAGKVFCY 62 679*****************************************9877 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence |
MSKKTQGRKK IEIKKLENSS NKQVTFSKRR AGIFKKAGEL SVLCGAHVAI IVFSGAGKVF 60 CYGHPNINTV LESYQNGLSS VVRVNEEAGD LLVAEFNKEY VEAEKEFEDL KRKATGIKQM 120 ADEKKKMMKE MNMSEGFWWD EAVDLAMMDE REWEQYFKAL EELRRKVAAR VDELKILNGT 180 MMGPPVPAVH HRLCHVPFMT SNNCFGNCQD VQFGSGYHDL GV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65360.1 | 1e-28 | M-type_MADS family protein |