PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr4g0445341
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family BBR-BPC
Protein Properties Length: 280aa    MW: 31127.8 Da    PI: 10.069
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr4g0445341genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind332.89.2e-10212801301
               GAGA_bind   1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki..rernlalsekkaavaerd.........maflqrdkalaernkalve 76 
                             mddd+ +  n+gyye +  +k +lglqlm+s+ erd+k+    r+  ++ + + +++rd         m+  +r++++++       
  RcHm_v2.0_Chr4g0445341   1 MDDDSLNMPNWGYYEAS--FKGHLGLQLMTSMGERDTKPfiPGRDPPVMVSADGYHPRDcvvqdapvpMSNYMRESWINQ------- 78 
                             999988889*****988..*******************9995555556888999*****999999999766699999999....... PP

               GAGA_bind  77 rdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekk 163
                              ++k+l++++++         +++vl++t+ ++++ q     l++++   r+e+ ++ +   e++ ++ke   +kkrq++  pk++k
  RcHm_v2.0_Chr4g0445341  79 -RDKFLTMMPANP--------NYGVLPETSVAQHSMQ----ILQPPPDASRDER-VNRM---EEPVVQKEGGPSKKRQNGGAPKAPK 148
                             .789999999655........499*****99997655....3555444444433.3333...35777788888999999999**999 PP

               GAGA_bind 164 akkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkr 250
                              kk++k    +k++++++   +r+k  kks+d+v+ng+++D+s++P+PvCsCtGa++qCY+WG+GGWqSaCCtt++S+yPLP+stkr
  RcHm_v2.0_Chr4g0445341 149 VKKPRK----PKDNSNPAV--PRVKPAKKSLDVVINGITMDISGIPIPVCSCTGAPQQCYRWGCGGWQSACCTTNVSMYPLPMSTKR 229
                             999999....444555555..789*************************************************************** PP

               GAGA_bind 251 rgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                             rgaRiagrKmSqgafkk+LekLaaeGy+++np+DL++hWA+HGtnkfvtir
  RcHm_v2.0_Chr4g0445341 230 RGARIAGRKMSQGAFKKVLEKLAAEGYNFANPIDLRTHWARHGTNKFVTIR 280
                             **************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    
MDDDSLNMPN WGYYEASFKG HLGLQLMTSM GERDTKPFIP GRDPPVMVSA DGYHPRDCVV  60
QDAPVPMSNY MRESWINQRD KFLTMMPANP NYGVLPETSV AQHSMQILQP PPDASRDERV  120
NRMEEPVVQK EGGPSKKRQN GGAPKAPKVK KPRKPKDNSN PAVPRVKPAK KSLDVVINGI  180
TMDISGIPIP VCSCTGAPQQ CYRWGCGGWQ SACCTTNVSM YPLPMSTKRR GARIAGRKMS  240
QGAFKKVLEK LAAEGYNFAN PIDLRTHWAR HGTNKFVTIR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.11e-109BBR-BPC family protein